Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0552 ATGGAGTTCTGGGGCGTTGAGGTCAAGGCTGGGGCACCTGTTGAAGTAGATCCAGATGACTTTGATAAATGCATACACCTGTCTCAGGCTGCTCTTGGTGAGGCAAAGAATAAAGCAAGTGAACCTGTGATCCTTTATCTGAAGTTTGGTGACCAGAAGCTTGTTTTAGGAACCCTTTCCCAGGAGAAATTCCCTCAACTATCTTTTGATTTGGTTCTAGAGAAAAAGTTTGAGCTCTCTCACAATTGGAAACATGGAAGTGTTTATTTCTGTGGTTACAAAGCGGAATTACCAGGGGAGATCGATGAGGACTTCACTGACAGCGAGGATGATGAGGATATCCCGGTGATGACCAGAGATAATGCAAAACCTGATATAAAGCCTGAAGTAGCAAAGGCTGCCGCATCTAAAAGTAATGATGTCAAGCTTGCTGATTCAAAGAAGCAAGTGAAGGTTGTGGATCCAAAGAAAGATGAAGATGAATCTGAAGATGATGAGGATGATGAATCAGATGACGAGGTTGATGATGACAGTTCTGATGAGGAAATGGTTGGCGGCCTTGTTGATGGTGGTGATGATGAGAGTGATGAAGATGATGATGAAACCCCTCCTAAGAAGGCTGATCAGGCTAAGAAGAGACCTAACGACTCTGCAATGAAAACTCCTGTCCCTGCCAAGAAAGCGAAATCTGCTACCCCTCAAAAGACTGATGGTAAGAAGGGTGGCCATGTAGCCACTCCTCATCCTCTGAAGAAGGAAGGAAAGACTCCAAAAAGTGACCAAACTCCCAAATCCGGTGGACAGTTTGCCTGCAAATCTTGTAGCAAGACTTTTACCTCAGAAGGGGGTCTGCAACAACATTCGAAGGCTAAGCATGGGGGTCAGTGA 888 0.4505 MEFWGVEVKAGAPVEVDPDDFDKCIHLSQAALGEAKNKASEPVILYLKFGDQKLVLGTLSQEKFPQLSFDLVLEKKFELSHNWKHGSVYFCGYKAELPGEIDEDFTDSEDDEDIPVMTRDNAKPDIKPEVAKAAASKSNDVKLADSKKQVKVVDPKKDEDESEDDEDDESDDEVDDDSSDEEMVGGLVDGGDDESDEDDDETPPKKADQAKKRPNDSAMKTPVPAKKAKSATPQKTDGKKGGHVATPHPLKKEGKTPKSDQTPKSGGQFACKSCSKTFTSEGGLQQHSKAKHGGQ 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0552 295 SMART c2h2final6 269 292 IPR013087 -
Prci6g0552 295 Gene3D Nucleoplasmin core domain 1 97 - -
Prci6g0552 295 FunFam Histone deacetylase HDT1 1 99 - -
Prci6g0552 295 MobiDBLite consensus disorder prediction 159 201 - -
Prci6g0552 295 ProSiteProfiles Zinc finger C2H2 type domain profile. 269 295 IPR013087 -
Prci6g0552 295 MobiDBLite consensus disorder prediction 260 286 - -
Prci6g0552 295 MobiDBLite consensus disorder prediction 141 158 - -
Prci6g0552 295 SUPERFAMILY beta-beta-alpha zinc fingers 258 291 IPR036236 -
Prci6g0552 295 MobiDBLite consensus disorder prediction 102 295 - -
Prci6g0552 295 Gene3D Classic Zinc Finger 267 295 - -
Prci6g0552 295 Pfam Nucleoplasmin-like domain 3 93 IPR041232 -
Prci6g0552 295 MobiDBLite consensus disorder prediction 232 259 - -
Prci6g0552 295 ProSitePatterns Zinc finger C2H2 type domain signature. 271 292 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0552 Prci-Chr6 3610364 3613588 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0552 1 107 C2H2 Transcription Factor Family AT5G03740 56.075 1.90e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci6g0552 NPL 1e-11 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0552 - - qsa:O6P43_000420 308.145
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci7g2425 7 36987938 36990885 Prci6g0552 6 3610364 3613588 CCT