Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0551 ATGGAGTTCTGGGGCGTTGAGGTCAAGGCTGGGGCACCTGTTGAAGTAGATCCAGATGACTTTGATAAATGCATACACCTGTCTCAGGCTGCTCTTGGTGAGGCAAAGAATAAAGCAAGTGAACCTGTGATCCTTTATCTGAAGTTTGGTGACCAGAAGCTTGTTTTAGGAACCCTTTCCCAGGAGAAATTCCCTCAACTATCTTTTGATTTGGTTCTAGAGAAAAAGTTTGAGCTCTCTCACAATTGGAAACATGGAAGTGTTTATTTCTGTGGTTACAAAGCGGAATTACCAGGGGAGATCGATGAGGACTTCACTGACAGCGAGGATGATGAGGATATCCCGGTGATGACCAGAGATAATGCAAAACCTGATATAAAGCCTGAAGTAGCAAAGGCTGCCGCATCTAAAAGTAATGATGTCAAGCTTGCTGATTCAAAGAAGCAAGTGAAGGTTGTGGATCCAAAGAAAGATGAAGATGAATCTGAAGATGATGAGGATGATGAATCAGATGACGAGGTTGATGATGACAGTTCTGATGAGGAAATGGTTGGCGGCCTTGTTGATGGTGGTGATGATGAGAGTGATGAAGATGATGATGAAACCCCTCCTAAGAAGGCTAAGAAGAGACCTAACGACTCTGCAATGAAAACTCCTGTCCCTGCCAAGAAAGCGAAATCTGCTACCCCTCAAAAGACTGATGGTAAGAAGGGTGGCCATGTAGCCACTCCTCATCCTCTGAAGAAGGAAGGAAAGACTCCAAAAAGTGACCAAACTCCCAAATCCGGTGGACAGTTTGCCTGCAAATCTTGTAGCAAGACTTTTACCTCAGAAGGGGGTCTGCAACAACATTCGAAGGCTAAGCATGGGGGTCAGTGA 879 0.4494 MEFWGVEVKAGAPVEVDPDDFDKCIHLSQAALGEAKNKASEPVILYLKFGDQKLVLGTLSQEKFPQLSFDLVLEKKFELSHNWKHGSVYFCGYKAELPGEIDEDFTDSEDDEDIPVMTRDNAKPDIKPEVAKAAASKSNDVKLADSKKQVKVVDPKKDEDESEDDEDDESDDEVDDDSSDEEMVGGLVDGGDDESDEDDDETPPKKAKKRPNDSAMKTPVPAKKAKSATPQKTDGKKGGHVATPHPLKKEGKTPKSDQTPKSGGQFACKSCSKTFTSEGGLQQHSKAKHGGQ 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0551 292 SUPERFAMILY beta-beta-alpha zinc fingers 255 288 IPR036236 -
Prci6g0551 292 ProSitePatterns Zinc finger C2H2 type domain signature. 268 289 IPR013087 -
Prci6g0551 292 MobiDBLite consensus disorder prediction 257 283 - -
Prci6g0551 292 FunFam Histone deacetylase HDT1 1 99 - -
Prci6g0551 292 Gene3D Nucleoplasmin core domain 1 97 - -
Prci6g0551 292 SMART c2h2final6 266 289 IPR013087 -
Prci6g0551 292 ProSiteProfiles Zinc finger C2H2 type domain profile. 266 292 IPR013087 -
Prci6g0551 292 MobiDBLite consensus disorder prediction 141 158 - -
Prci6g0551 292 MobiDBLite consensus disorder prediction 229 256 - -
Prci6g0551 292 MobiDBLite consensus disorder prediction 159 200 - -
Prci6g0551 292 Pfam Nucleoplasmin-like domain 3 93 IPR041232 -
Prci6g0551 292 Gene3D Classic Zinc Finger 264 292 - -
Prci6g0551 292 MobiDBLite consensus disorder prediction 102 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0551 Prci-Chr6 3610364 3613589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0551 1 107 C2H2 Transcription Factor Family AT5G03740 56.075 1.95e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci6g0551 NPL 1e-11 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0551 - - qsa:O6P43_000420 297.36