Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0547 ATGGAGGACTGTACGGCCACCCAGTCTTTGAACTCGACGCAGGCCGAACTACACATGGCAAGTACGGCCGACATTAACAACCCCTCTTTTGCAATGGGAGCTGTCGGAGTCCAGAACTCCGCCGTCGGAGGAAATTCCGAGCCTATCGGTTCGGAGGTTGGGTTGAAGAGGAGAAGGGGACGGCCTCGGAAGTACGATGCAAACCTTTCGTCCCCAAAATCGACGCCGTCGGGACTTTCAACTTCTCCATCTTCTAAGCGAGGCAGAGGAAGGCCACGCGGCTCTGGAAAATTGCAGATTTTAGCTTCAATGGGAGGAATGTTTTCAGCCACAGCTGGAGGAAGCTTCGTCCCTCATGTAGTGATTGTGAATCCTGGGGAGGATGTTTTGGATCGCATATTATCATTTTCTCGTAGAGGCCCTCGAGCTCTTTGCATCCTCTCAGCTATCGGTGCTGTAGCTGTTGTCCACATTCGGCAACCTGATTCTTCTGGTCATTGTTTGAGATATCAGGGTCTCTTTGAGATAATAACGTTATCTGGATCTTATACCTATGGTGGCATTGGTGGTGGTACACATCGGAAAAGTCTCACCATGAGTATATCGCTGGCTCAACCGGATGGGAAGCTTTTCGGAGGTAGTGTTGGGGGCTCTTTGATAGCGGCTGGCCGTATTCAACTAATTCTGGGCACTTTTAAGCAAAACATCAGTAGTGAAATTAAAAGGAGGCTGTCCCCTGGATCTTCTGGTACTGCCGACATGCCTGGTGATTCAGATTCAAGGAGGCTTTCCTTACAAGTTCCTAAACTGATAGAATCTGAACAGAGTTTCCCTTCGCCAACGTCCGGACTTATGCCGACATCTAATGGACTGCCTGATCATGTCGCGCCTAGAACATCTAATGGATTTCCAGACAACGTCTCTCCTGCAACAACTAATGGAAATGGGTTACCAGATTTCTTTTCTCCTAATCAAAGCATGCACCCTACCTCGTTGAACGGTAGCGGCCTGGACTGTCAGATCTTGCAGCCCTTGACAGATCAAATAACATTTGGAGATAATTAA 1065 0.4864 MEDCTATQSLNSTQAELHMASTADINNPSFAMGAVGVQNSAVGGNSEPIGSEVGLKRRRGRPRKYDANLSSPKSTPSGLSTSPSSKRGRGRPRGSGKLQILASMGGMFSATAGGSFVPHVVIVNPGEDVLDRILSFSRRGPRALCILSAIGAVAVVHIRQPDSSGHCLRYQGLFEIITLSGSYTYGGIGGGTHRKSLTMSISLAQPDGKLFGGSVGGSLIAAGRIQLILGTFKQNISSEIKRRLSPGSSGTADMPGDSDSRRLSLQVPKLIESEQSFPSPTSGLMPTSNGLPDHVAPRTSNGFPDNVSPATTNGNGLPDFFSPNQSMHPTSLNGSGLDCQILQPLTDQITFGDN 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0547 354 MobiDBLite consensus disorder prediction 240 255 - -
Prci6g0547 354 MobiDBLite consensus disorder prediction 39 96 - -
Prci6g0547 354 MobiDBLite consensus disorder prediction 301 335 - -
Prci6g0547 354 MobiDBLite consensus disorder prediction 68 88 - -
Prci6g0547 354 SUPERFAMILY AF0104/ALDC/Ptd012-like 115 235 - -
Prci6g0547 354 CDD DUF296 118 232 IPR005175 -
Prci6g0547 354 Gene3D - 118 249 - -
Prci6g0547 354 MobiDBLite consensus disorder prediction 269 288 - -
Prci6g0547 354 SMART AT_hook_2 56 68 IPR017956 GO:0003677
Prci6g0547 354 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Prci6g0547 354 MobiDBLite consensus disorder prediction 240 335 - -
Prci6g0547 354 Pfam Plants and Prokaryotes Conserved (PCC) domain 118 233 IPR005175 -
Prci6g0547 354 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 32 273 IPR039605 GO:0003680
Prci6g0547 354 ProSiteProfiles PPC domain profile profile. 113 257 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0547 Prci-Chr6 3549249 3553167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0547 51 232 AT-hook Motif Nuclear Localized (AHL) Family AT2G45850 45.699 1.01e-44 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0547 - - pcin:129313760 665.611