Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0546 ATGAAGAACCATAAGGTTGCAGACCAACACTTATCTACTGTTCGGTCCATCGTTGGCGCCGAATATACTGACATGGATATCATCAGAGCCCTGCACTTGGCCAACAATGACATCACCGCCGCCATTAATATTATTTTTGATACCCCCAACTTCAAATTGAAAGAGAGGTTAAGTGTGGGCACTCAGAGGAATTCACAGGTTTTGCATCGAAATTCATGCTCTGATGCTGGAACTGGAGGTGGAAGTGTCATGGCGAAGTCCAAGCCAACTGCTGCAGAGGACAATAATCACTCTCTGGGGTTGGAAGCAAATGTTGCCGACTCGGTTTCTAACTCAGGTGATTGTGGCGTCGAGGACGTGGAAGGGCATTCAAGTTCAGCGGCAAGTGATTGGTGGTTCGTGGGTTGTGGGGAAATGGCGGGGCTTTCGACCTGTAAAGGGAGGACTTTGAATCCTGGTGATCAAGTGTTGTTCAACTTTCCGCTGAAGACAGGGTCAACTACGCCGTCCCCGGGTAAGGGTTTTGGACGGGGACGGCAGGCAGCAGCAACTTGTTCGGAGATAGTGCGATTCTATACCAAAGAAACGGGAGAGATTGGTAGAATACCGAATGAATGGGCTAGGTGTCTCTTGCCCCTTCTACGGGATAAGAAAGTGAGGATTGATGGCCATTGTAAACATGCTCCTAATAATTTGAGCATCATGGACACCGTTCTTTTGTCAATCAGAGTATTCATCAATAGTTCAATGTTTCGTAAACATCACCAGGTTTCTCTTAAGGTCACCGCAAATACCACTGATGAATCAGTCTTTCATCCTCTTCCAACCTTGTTTAGGTTGCTAGGCTTGAGCCCTTTCAAAAAGGCAGAGTTCACTCCTGGTGACTTGTACTCAAAGAAGCGCCCTTTCAATCAAAAGGCGACATTACTGCACATCAAGTCCAAGTGTCCTTCTGTAAATGATAATGAGGTAGACAATGAGGATTCAATATCTGAAACTGACCTTGACAAGATTGTTGGTGTTGGAACTTGCTCGGAGCTAGAGGAAATGGATCCCCCTGGTAATCTTCTGTGTGAATTGCGGCCGTATCAAAAGCAAGCTCTTCATTGGATGATGCAGCTGGAGAGGGGACTGCCTATCGATGAGGCAGCTTCAACCCTTCATCCATGTTGGGAGGCATATCACCTGGCAGATGAGAGGGAGCTGGTTATTTATTTGAATGTTTTTTCTGGTGAAGCTACAATAGAATTTCCAAGCACACTTCAGATGGCTAGAGGAGGAATTTTGGCAGATGCTATGGGGCTCGGGAAGACCATTATGACCATAGCCCTCCTCCTTGCCCATTCAAGCACTGGTGGTTCATCAAGTAGTCAACTCATGGATCAGCCCTTGTCCGAAAGTGGTGGAGTTAATGACACGGCACGAAACTCTTCAAAGGTACCTAAGAAGGCAAACAAGTTTTCTGGTTTTGATAAACTGAGGAAGCAAAAGAATACTCGAACAAATGGTGGCAGTCTGATAATATGTCCCATGACGCTTCTAGGACAGTGGAAGGCAGAAATTGAGACTCACGTGCAGCCTGGATCTCTGTCTTTATATGTTCATTATGGACAGAGTAGACCAAAAGATGCAAGAATTCTAGCTCAGAGTGATGTTGTAATTACTACATATGGAGTTGTAGCCTCTGAGTTTTCCAGTGAGAATGCAGAGGATAATGGTGGACTTTTCTCAATTCGATGGTTTAGGGTGGTTCTAGATGAGGCACATACCATAAAATCTTCCAAAAGCCAAATATCTATGGCTGCTTCAGCCTTAGTTGCTGACAGACGTTGGTGTCTTACTGGCACTCCTATCCAGAACAACCTTGAGGATATCTACAGTCTTCTTCGATTTCTGAGAATAGAGCCTTGGGGTCATTGGGCCTGGTGGAACAAACTTGTTCAGAAACCATTTGAGGAGGGTGATGAGAGAGGGCTAAAGTTGGTTCAATCCATCTTGAAGCCAATCATGTTGAGGAGAACCAAGCATAGCATGGACCGAGACGGCAAGCCTATTATTGTTCTTCCTCCAGCCGAAGTGCAGATAGTTTATTGTGAACTCACTGAAGCTGAAAAGGACTTTTATGAGGCACTATTCAAAAGATCTAAGGTCAAATTCGATCAGTTTGTTGATCAAGGGCGTGTTCTTCATAATTATGCTTCTATATTGGAGTTGCTCTTACGTCTTCGGCAATGCTGTGATCATCCATTTCTTGTAATGAGCCGAGGTGACACTCAAGAATATTCCGACCTAAACAAGCTAGCTAAACATTTCCTCAAAGGAAGCCATAATGCTTCAGAAGGGGAAGCCAAAGGTGCACCTTCACGGGCTTATGTTCAAGAAGTTGTGGAAGAGCTACGCAAAGGGGAACAGGGAGAGTGTCCAATATGTCTGGAAGCATTTGAAGACGCAGTGTTGACCCCTTGTGCTCACCGCTTATGCCGGGAATGCCTCTTGGCTAGTTGGAGGAATTCTAATTCTGGTTTATGCCCTGTTTGTAGAAAAACAATAAGCAGGCAAGACCTTTTAACTGCCCCCAGGGAAAGTCGGTTTCAGATTGATATTGAGAAGAACTGGGTGGAGTCATGCAAGGTAACTGCCCTTTTGCGTGAACTTGAAAATCTTCGCCCTTCAAGCTCTAAGAGCATTGTTTTCAGCCAGTGGACTGCTTTTCTAGACCTCTTGCAGATTCCCTTTACGAGGAATAACATTCCATTTGTTCGTCTTGATGGGACCTTGAATCAGCAGCAGCGTGAAAAAGTACTTAGACAATTCTCAGAAGACAGCAATATCCTGGTGTTGTTGATGTCCCTAAAAGCAGGTGGAGTGGGTATAAATCTAACTGCAGCTTCAAATGCTTTTGTCATGGATCCGTGGTGGAATCCAGCTGTGGAGGACCAAGCTGTCATGCGAATCCATCGCATTGGACAAACAAAGAATGTGACCATCAAACGGTTTATTGTGAAGGGGACAGTTGAGGAGAGAATGGAAGCAGTGCAAGCTCGCAAACAGCGAATGATTTCTGGTGCCTTGACTGATCAAGAAGTTCGAACCGCACGGATTGAGGAGTTGAAGATGCTTTTTACTTAG 3129 0.4522 MKNHKVADQHLSTVRSIVGAEYTDMDIIRALHLANNDITAAINIIFDTPNFKLKERLSVGTQRNSQVLHRNSCSDAGTGGGSVMAKSKPTAAEDNNHSLGLEANVADSVSNSGDCGVEDVEGHSSSAASDWWFVGCGEMAGLSTCKGRTLNPGDQVLFNFPLKTGSTTPSPGKGFGRGRQAAATCSEIVRFYTKETGEIGRIPNEWARCLLPLLRDKKVRIDGHCKHAPNNLSIMDTVLLSIRVFINSSMFRKHHQVSLKVTANTTDESVFHPLPTLFRLLGLSPFKKAEFTPGDLYSKKRPFNQKATLLHIKSKCPSVNDNEVDNEDSISETDLDKIVGVGTCSELEEMDPPGNLLCELRPYQKQALHWMMQLERGLPIDEAASTLHPCWEAYHLADERELVIYLNVFSGEATIEFPSTLQMARGGILADAMGLGKTIMTIALLLAHSSTGGSSSSQLMDQPLSESGGVNDTARNSSKVPKKANKFSGFDKLRKQKNTRTNGGSLIICPMTLLGQWKAEIETHVQPGSLSLYVHYGQSRPKDARILAQSDVVITTYGVVASEFSSENAEDNGGLFSIRWFRVVLDEAHTIKSSKSQISMAASALVADRRWCLTGTPIQNNLEDIYSLLRFLRIEPWGHWAWWNKLVQKPFEEGDERGLKLVQSILKPIMLRRTKHSMDRDGKPIIVLPPAEVQIVYCELTEAEKDFYEALFKRSKVKFDQFVDQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQEYSDLNKLAKHFLKGSHNASEGEAKGAPSRAYVQEVVEELRKGEQGECPICLEAFEDAVLTPCAHRLCRECLLASWRNSNSGLCPVCRKTISRQDLLTAPRESRFQIDIEKNWVESCKVTALLRELENLRPSSSKSIVFSQWTAFLDLLQIPFTRNNIPFVRLDGTLNQQQREKVLRQFSEDSNILVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEDQAVMRIHRIGQTKNVTIKRFIVKGTVEERMEAVQARKQRMISGALTDQEVRTARIEELKMLFT 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0546 1042 Pfam SNF2-related domain 363 751 IPR000330 GO:0005524|GO:0140658
Prci6g0546 1042 Pfam HIRAN domain 135 242 IPR014905 GO:0003676|GO:0008270|GO:0016818
Prci6g0546 1042 SMART helicmild6 906 989 IPR001650 -
Prci6g0546 1042 SMART ultradead3 356 654 IPR014001 -
Prci6g0546 1042 Pfam Zinc finger, C3HC4 type (RING finger) 804 852 - -
Prci6g0546 1042 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 347 673 IPR027417 -
Prci6g0546 1042 ProSitePatterns Zinc finger RING-type signature. 822 831 IPR017907 -
Prci6g0546 1042 ProSiteProfiles Zinc finger RING-type profile. 807 847 IPR001841 -
Prci6g0546 1042 CDD DEXDc_SHPRH-like 360 673 - -
Prci6g0546 1042 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 877 1042 IPR001650 -
Prci6g0546 1042 CDD UBA_Cbl_like 11 49 - -
Prci6g0546 1042 Gene3D - 689 1042 IPR027417 -
Prci6g0546 1042 MobiDBLite consensus disorder prediction 456 483 - -
Prci6g0546 1042 SMART HIRAN_2 134 246 IPR014905 GO:0003676|GO:0008270|GO:0016818
Prci6g0546 1042 Pfam Helicase conserved C-terminal domain 878 989 IPR001650 -
Prci6g0546 1042 Gene3D - 486 674 IPR038718 -
Prci6g0546 1042 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 685 1031 IPR027417 -
Prci6g0546 1042 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 418 635 IPR014001 -
Prci6g0546 1042 SUPERFAMILY RING/U-box 795 853 - -
Prci6g0546 1042 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 123 1042 - -
Prci6g0546 1042 Gene3D - 418 479 IPR038718 -
Prci6g0546 1042 CDD SF2_C_SNF 873 1000 - -
Prci6g0546 1042 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 768 869 IPR013083 -
Prci6g0546 1042 SMART ring_2 807 846 IPR001841 -
Prci6g0546 1042 FunFam DNA repair protein RAD5B 415 674 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0546 Prci-Chr6 3530840 3540128 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0546 5 1042 RAD5 or RAD16-like Gene Family AT5G22750 70.342 0.0 1499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Prci6g0546 SNF2_N 2.3e-88 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0546 K15505 - qsa:O6P43_000417 1612.43