Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0544 ATGGAGGCCCCTGTTGTCAGATCGAGGGGTCGGCCGAGGAAACGGAGGAGAAAAGAGGATGAAAATGGGACGGATGATGGGAGATCGGTTCCCGATTTGAAAAGGCAAGCGGCTGGGACAAGAAGACCGATAGCACTGGTTGGACGATATATAATTAAAGAGTTTAAGGGAAGTGGAGTTTTTCTTGGGAAAGTTGTGTATTACGAGTGTGGCTTATATAGAGTCAGTTATGAGGATGGTGATTTCGAGGATTTAGATAGCAGCGAAATTCGTGGAATGCTTCTCAACGACTGTGATTTTGATGATGAGTTGACTAGAAGGAGGAATGAATTAGATCAATTGGTGTTGAAGTATAGTGCCAAGAAAACAGATGGCACGAAGAACAGTTCTGCTGACTTAAACAAAGTTGTCCTCGGGCTTGAGGCCCTTGTGTCAAGTGAATTGTCTGGTGGGTTATTGACTGAACACGACGAGGTAGATGTTGAGGAGGATGCTCATTCATCAAGCGACGAAAGAGATTCCGCGTCTGAAGCAGAGATACCTTCTCTACCTCCTCCACTGCAGTTTCCACCGTCTTCAGGAACTATTGGGGTGCCAGAGCCATATGTCTCTCATCTTCTGGCAGTCTATGGATTTTTGCGGTCATTCAGCATTCGCCTGTTTTTAAGTCCGTTTTCATTGGATGATTTTGTTGGTTCTCTTAACTGCCAAGTTTCAAATACTTTGTTTGATTCCATTCATGTTTCACTAATGCGTGCATTGAGGCGTCACCTTGAAACACTTTCATCTGATGGCTCAGAGCATGCATCAAAATGCTTGAGGTGTAATGATTGGGGTTTGCTTGATGCATTGACTTGGCCTGTTTTTGTTGTTCAATATCTAGCAATTTATGGATACACAAAAGGACCTGAGTGGAAAGGATTTTATGATGAGATTTTTAATGGCGAGTATTATTTATTACCTGTAAGTAGGAAGTTGATCATACTGCAAATTCTTTGTGATGATGTTTTGGAGTCTGAGGAAATGAAAGCTGAAATGGGCATTCGTGAAGAATTAGAAGTTGGGATGGACTATGATGCTCAAGATATCCTTTCAGAAGAAAATTGGCCAAGATTCCATCCAAGAAATGCTAAAACTGCTTGCAAGGATAAAGAAGCTACAAAGTTTGTTTTAGAATCTAATTCTGTGAAGCCACCTGCTAACTCTGTTCTAGATTTCAGAGACACTAGAAGGACCGAGGATGCTGATGTTGACAGAAATGGAGATGAATGTCGCCTCTGTGGCATGGATGGGACCTTGCTTTGCTGTGACGGATGTCCGTCTGCATATCACTCTAGGTGTATTGGAGTGATGAAAATGTTTATACCAGAAGGGCCATGGTATTGTCCAGAGTGCAAAATTAATATGAATGGGTTAAGCATTGCACGGGGAACATCACTTAGAGGGGCTGAATTATTTGGAATGGATCTTTATGGACAACTCTTCATGGGTACTTGCGACCACTTACTGGTACTCACTGTCAACAGTGAACTTTGTCTCAGATATTACAACCAGAATGACATTTCAAAAGTTCTCCAGGTGCTTTACGCTTCTGTTGACCATAGGCCCGTCTATTATGGAATTTGTATTGCTGTGTTACATTATTGGAATATTCCAGAAAGTATCCTGCCAGTATCTGTTAGAACTGGAACAGATGTTAACAATTCAAGTACAGTGGAAGATGCAAAGTTCTCTTGTTTATCAACCACTCCGTTGGGTGAAAAAGAGGATGCAGCTGTTAATTTAGTGAAAGTAGAATACCCTGTAACCAGTGGGATTGTAACTCATGGTAATTACGTGGTTCCATCTGACTCGCTGGTCACCACTACTAGAGAGGCTTGTGCTTTCGAAATCAGCAGTGACACTAGATCTAGGGGTTGCTTTACCATGAATACTATATTTTCTAAGGAGACTAGAATGGAGACTGTCATCTCTGGTGGTCCTGATGGTCATCAACGCAGTCTCTTTGATATGACCACCAGTCATGGGCATGCAAATGATAAGCTGTTGCCTTTAACTCTGTCCTTGCGACTTAAAGAAGGCAACCAAACTAATTCTGTAAAGGTTGAACATAATTCAACTAAGGATTTTGTATACATGGGTTTTTCTTTTAAGCCTCAGTCTTACATTAATCACTACATGCATGGTGATTTTGCTGCATCTGCTGCTGCTAAATTGGCTATTCTTTCTTCAGAGGATTCTAGGTCAGAGGGTCATGTTTCAGATAATTTGAGGAAATTTACAGCTGAAAGCGCTTCTTTGCAAGCAAAAGCATTCTCAATGACAGTTTCACGCTTCTTTTGGCCAAATTCTGAAAAGAAGCTTGTAGAAGTACCAAGAGAGAGGTGTGGCTGGTGTCTTTCTTGTAAAGCCTCAGCCTCAAGCAAGAGAGGTTGCATGCTAAATCATGCTGCCCTGAGTGCCACCAAAAGTGCTATAAAAGTTTTAAGTGGTCTTTCCACTGTAAGGAGTGGAGAGGGGATTCTTCCAAGCATTGCAACATATATCATATATTTGGAGGAAAGTTTACATGGTTTAATAGTTGGGCCTTTTCTAAATGCAAATTACAGAAAGCTATGGCGTAAACGAGTTGAACAGGCTAAAACATTTAAAGCTATAAAGCCTCTTTTGCTTGAACTTGAGGAAAACATTCGCACAATATCTTTTACTGGTGAGTGGGTTAAGCTGATGGATGATTGGTTGGTTGAATCTTCTATTATTCAAGGTGCTGCAAGTTCTGTTGGAACAATACAGACACGTGCACCAAGTGGAAGGCGTTACAAGAAACAATCAGCTATTGATGAAGTTACCGCTGATGTTTCTCATGAAAACAATCTTGACTGGTGGTATGGTGGTAAATCCATGAAAATATTATTTCTAAAAGCAGTTTTGCCAAAATCTGTGGTCAGAAAGGCAGCTCGCCAAGGTGGTTTGAGAAAAATTTCTGGTATTTCCTATGCTGATGGCTGTGAAATCCCTAAAAGAAGCAGACAGATAGTTTGGAGAGCTGCAGTTCAAATGAGTGGGAATGCATCACAGCTTGCACTTCAGGTCAGATACCTTGATTTCCATCTTAGATGGAGTGATCTGATTTGTCCTGAGCAAAATCTCCAGGATGGGAAAGGTCAAGAGACTGAATCCTCTGCATTCAGAAATGCTAATATCTGTGATAAGAAAGAAGTGGGGGGGAAACTTTTGTATGGAGTTGTTTTTGGGAACCAAAAGCATCTTCCTTCTCGTATAATGAAAAACATTGTTGAAGTAGAACAATGTCGAGAAGGAAAGGAAAAGTATTGGTTTTCTGAAGCACGTGTTCCTTTATATTTGGTAAAAGAGTATGAAGAAGGTATAGAAAAAATGCCATCTCATCAAGAGAATTTGAAGTTGGAATCTCATCAGCAAAGGAGGCGGTTGAAAGCTGTTTGCAAGGATATATTTTTTTACCTTACCTGCAAGAGAGACAGCTGGGATATATTTTCATGTGCTGTATGTCAGGTGGACGTATTAGCTGGGAATGCTCTCAAGTGCAATGCATGTCAAGGTTATTGCCATGAGGGCTGTTCTATAAGTTCAACATTCTCTACAAACAAGGAGGTTGAGTTCTTAACCACATGCAAGCACTGTTATGCCAAATTGCTTGCCCAAAAAAAGACCAGTGATGAGTCTCCAACCAGTCCCTTACTCTTGCAAGGACAAGAACATAGCTCTGTGGCTGTTATGAAGGGATCAAGGCCTAAATGTTATGATCAAGTCTTGAAATCTACCAGTATCAAGGATACTTGTCCTGACGTGAAACAAGGCACTCCTGATTCCTCTCTGGCAACTAAAAGCCGTCGCAGGATGTCTTCTTGGGGTATTATATGGAATAAGAAGGCTGGTGAGGATACAGGCATTGATTTCAGGCTTAGAAACATACTTCTAAAGGGAGGTTCAGGTGCACCTCACTTACAACCTGTTTGTCACTTGTGCCGTAAACCATATAGGTCCGATCTGATGTATGTTTGCTGTGAGACATGCAAGAATTGGTATCATGCTGATGCTCTTGAACTAGAAGAGTCAAAAATTTTTGAAGTGTCAGGCTTCAAATGCTGCAAGTGCCGCAGGATAAAATCTCCAGAGTGTCCTTACTCTGATAAGAAGCCCAAGATGCAGGAGGGCACTAAGAAACACCGTCGACCATCAAAGAAGGATAATTCAAGCATCAACAATTTTGGAGTTATTTCCGAACCAAAACAGTGTGTGCCTGCTACCCCTAACTTTCCTATAGGAGATGATGGAATGAGACAAGACAATTACCCTCTGCTTTACTCTCTTTCAAGTGCTGAGCTGATAACAGAGCCTAATACAGAAGTGGATGTTGAGAGGAATGCTGTCTCTGGTCTAGGGCTTCAGAAACTACCAGTGAGAAGACATGTTAAGCATGAGGGGGATGGTGATGAATCCTTTGGAACAGGTAATCTGTCAGCTGCAGAGAAGGCATCATCTCCTGTGGAATATGACCCTGCTGTTTGCCTAGATAATAATCTTCTGAATGAATGTGGAAGTGAAAATTATGAATTCATGGACTTTGAACCCCATACCTACTTCTCTGTAACAGAATTGCTGCAGCCAGATGATAATCAGTTTGAGGGAGCTGATGGATCTGAGGACTTGTCTGGATACTTGGAAAGTGTTTCCACTTTGAATATGAATGGCATTCCTGAAGAATGTGGCGCTCTTAGTTTAGTTGAAAAACAAGAACCTGCGGCTTATTTACCAGGCAGTGTTTGTTGTCAATGCTTGCAGATGGAACCAGCTCCTGATCTCTCTTGTGAGATTTGTGGTCTTTGGATTCACAGCCACTGTTCACCCTGGGTTGAATCACCTTCTAGATTAGGAGCTGGAGGTGCGGTAATTGTCGGGAATGGCAATAGCTGA 4956 0.4167 MEAPVVRSRGRPRKRRRKEDENGTDDGRSVPDLKRQAAGTRRPIALVGRYIIKEFKGSGVFLGKVVYYECGLYRVSYEDGDFEDLDSSEIRGMLLNDCDFDDELTRRRNELDQLVLKYSAKKTDGTKNSSADLNKVVLGLEALVSSELSGGLLTEHDEVDVEEDAHSSSDERDSASEAEIPSLPPPLQFPPSSGTIGVPEPYVSHLLAVYGFLRSFSIRLFLSPFSLDDFVGSLNCQVSNTLFDSIHVSLMRALRRHLETLSSDGSEHASKCLRCNDWGLLDALTWPVFVVQYLAIYGYTKGPEWKGFYDEIFNGEYYLLPVSRKLIILQILCDDVLESEEMKAEMGIREELEVGMDYDAQDILSEENWPRFHPRNAKTACKDKEATKFVLESNSVKPPANSVLDFRDTRRTEDADVDRNGDECRLCGMDGTLLCCDGCPSAYHSRCIGVMKMFIPEGPWYCPECKINMNGLSIARGTSLRGAELFGMDLYGQLFMGTCDHLLVLTVNSELCLRYYNQNDISKVLQVLYASVDHRPVYYGICIAVLHYWNIPESILPVSVRTGTDVNNSSTVEDAKFSCLSTTPLGEKEDAAVNLVKVEYPVTSGIVTHGNYVVPSDSLVTTTREACAFEISSDTRSRGCFTMNTIFSKETRMETVISGGPDGHQRSLFDMTTSHGHANDKLLPLTLSLRLKEGNQTNSVKVEHNSTKDFVYMGFSFKPQSYINHYMHGDFAASAAAKLAILSSEDSRSEGHVSDNLRKFTAESASLQAKAFSMTVSRFFWPNSEKKLVEVPRERCGWCLSCKASASSKRGCMLNHAALSATKSAIKVLSGLSTVRSGEGILPSIATYIIYLEESLHGLIVGPFLNANYRKLWRKRVEQAKTFKAIKPLLLELEENIRTISFTGEWVKLMDDWLVESSIIQGAASSVGTIQTRAPSGRRYKKQSAIDEVTADVSHENNLDWWYGGKSMKILFLKAVLPKSVVRKAARQGGLRKISGISYADGCEIPKRSRQIVWRAAVQMSGNASQLALQVRYLDFHLRWSDLICPEQNLQDGKGQETESSAFRNANICDKKEVGGKLLYGVVFGNQKHLPSRIMKNIVEVEQCREGKEKYWFSEARVPLYLVKEYEEGIEKMPSHQENLKLESHQQRRRLKAVCKDIFFYLTCKRDSWDIFSCAVCQVDVLAGNALKCNACQGYCHEGCSISSTFSTNKEVEFLTTCKHCYAKLLAQKKTSDESPTSPLLLQGQEHSSVAVMKGSRPKCYDQVLKSTSIKDTCPDVKQGTPDSSLATKSRRRMSSWGIIWNKKAGEDTGIDFRLRNILLKGGSGAPHLQPVCHLCRKPYRSDLMYVCCETCKNWYHADALELEESKIFEVSGFKCCKCRRIKSPECPYSDKKPKMQEGTKKHRRPSKKDNSSINNFGVISEPKQCVPATPNFPIGDDGMRQDNYPLLYSLSSAELITEPNTEVDVERNAVSGLGLQKLPVRRHVKHEGDGDESFGTGNLSAAEKASSPVEYDPAVCLDNNLLNECGSENYEFMDFEPHTYFSVTELLQPDDNQFEGADGSEDLSGYLESVSTLNMNGIPEECGALSLVEKQEPAAYLPGSVCCQCLQMEPAPDLSCEICGLWIHSHCSPWVESPSRLGAGGAVIVGNGNS 1651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0544 1651 MobiDBLite consensus disorder prediction 155 177 - -
Prci6g0544 1651 SUPERFAMILY FYVE/PHD zinc finger 1328 1385 IPR011011 -
Prci6g0544 1651 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1322 1397 IPR013083 -
Prci6g0544 1651 SMART testlast3 200 260 IPR018501 -
Prci6g0544 1651 ProSiteProfiles Zinc finger PHD-type profile. 421 468 IPR019787 -
Prci6g0544 1651 SMART PHD_3 1173 1222 IPR001965 -
Prci6g0544 1651 SMART PHD_3 1332 1380 IPR001965 -
Prci6g0544 1651 SMART PHD_3 423 466 IPR001965 -
Prci6g0544 1651 MobiDBLite consensus disorder prediction 15 32 - -
Prci6g0544 1651 ProSiteProfiles DDT domain profile. 200 260 IPR018501 -
Prci6g0544 1651 Pfam PHD-finger 424 466 IPR019787 -
Prci6g0544 1651 SUPERFAMILY FYVE/PHD zinc finger 394 467 IPR011011 -
Prci6g0544 1651 CDD Tudor_AtPTM-like 47 95 IPR047365 -
Prci6g0544 1651 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 414 471 IPR013083 -
Prci6g0544 1651 Pfam DDT domain 203 257 IPR018501 -
Prci6g0544 1651 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 304 353 IPR028942 -
Prci6g0544 1651 ProSitePatterns Zinc finger PHD-type signature. 424 465 IPR019786 -
Prci6g0544 1651 CDD PHD_SF 1332 1379 - -
Prci6g0544 1651 MobiDBLite consensus disorder prediction 1390 1414 - -
Prci6g0544 1651 MobiDBLite consensus disorder prediction 155 191 - -
Prci6g0544 1651 PANTHER PHD FINGER FAMILY PROTEIN 42 1406 - -
Prci6g0544 1651 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0544 Prci-Chr6 3517424 3525406 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0544 290 568 EF-hand Containing Proteins AT5G22760 47.735 9.76e-72 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Prci6g0544 DDT 5.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0544 - - lang:109351702 1946.4