Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Prci6g0515 | ATGGAACTCTACAATCGGAGACTGCTCCTGCTGAACGAAGATGAGCCCTCCTCCAACGACGCCTCTTCACCACCAAGGTTAACGGCCGCGCCACTGTCGGCTTCATTGTTCGTAACACCTTTGAAACTATCAGCGCCTGTAACCTTCAATTCTGAAGTCGCTTGCATCGTCATCATCGTCCTGCTCTTAATAGCCTTCATCGTTCTGTTCATGCGACGGTTTGCCGACCACTCCCCCGCGCCCGCCCGCTACTTGCCATCGGCGTCCTCTAATTATTATTCTCCATCATCCTCGTGCGGTGGTCTCGACCAAACCACCGTCCAGTCCTTGCCGGGGTTTCGGTACAACGCAGAGGCAAAAAACCAGGAGGACTGCGCCATCTGCCTCAGCGAATTCGAGATCGGTGAGACCGTTAAGATGGTTCCCAACTGTAAGCACGTGTTCCACCAGCAATGCATCGACAGATGGCTATCCTCGCACGTGACATGCCCGATTTGTCGGGGAACAAAATTTTTTGTTGGGGAACAACAGCAGGCAGAGTCGGCTAAGGCGCAGCCAACTAGCGATCAGGTCGTTGGACGTCGACACGTAGCATCGACTGTCGAGAATGGTGAAACGTGGCGACAAGGTAGTGCAATGGGGACATGCAGCCGGAGACGGAGCCGTAGTTGCTCAAGCTTTAGAGATACGGTGGTTTTGCGAAGAACGTTAAGCTATTGA | 720 | 0.5347 | MELYNRRLLLLNEDEPSSNDASSPPRLTAAPLSASLFVTPLKLSAPVTFNSEVACIVIIVLLLIAFIVLFMRRFADHSPAPARYLPSASSNYYSPSSSCGGLDQTTVQSLPGFRYNAEAKNQEDCAICLSEFEIGETVKMVPNCKHVFHQQCIDRWLSSHVTCPICRGTKFFVGEQQQAESAKAQPTSDQVVGRRHVASTVENGETWRQGSAMGTCSRRRSRSCSSFRDTVVLRRTLSY | 239 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Prci6g0515 | 239 | CDD | RING-H2_EL5-like | 124 | 167 | - | - | |
| Prci6g0515 | 239 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE ATL42 | 35 | 168 | - | - | |
| Prci6g0515 | 239 | Pfam | Ring finger domain | 124 | 167 | IPR001841 | - | |
| Prci6g0515 | 239 | FunFam | E3 ubiquitin-protein ligase ATL6 | 91 | 171 | - | - | |
| Prci6g0515 | 239 | SUPERFAMILY | RING/U-box | 109 | 173 | - | - | |
| Prci6g0515 | 239 | ProSiteProfiles | Zinc finger RING-type profile. | 125 | 167 | IPR001841 | - | |
| Prci6g0515 | 239 | SMART | ring_2 | 125 | 166 | IPR001841 | - | |
| Prci6g0515 | 239 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 91 | 170 | IPR013083 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Prci6g0515 | Prci-Chr6 | 3346951 | 3347670 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Prci6g0515 | 56 | 238 | C3H Transcription Factor Family | AT2G27940 | 37.879 | 2.17e-31 | 114 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Prci6g0515 | - | K10664 | pcin:129313653 | 452.595 |