Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0504 ATGGACGTGGATGGCACAGACCAGCTTGTGGGGTCGACCACCTCTATTAACGTCGCCAAGGGCAAACGCACGAAACGCCACAGGCCCTTCTCCGCCAGCGTCACTCACTCCACCTCCTCCTCTGCTTCCGCCGATGATAACCTGTCCTTCAATTCCTCCGCCTCCGCCACTCTGGACGCCACAGAAGAAGAAGAAGAAGAAGACATGGCTAATTGCTTGATTCTCTTGGCTCAGAGCGGGGATGCTCCTCACAAGCAGCCTCCCACCACCAAGAATATCAGCGGCTTCTATGTTTACGAGTGCAGAACTTGTAACAAATCCTTCCCTTCCTTTCAAGCCCTGGGCGGACACAGGGCAAGCCACAAGAAGCCTAAGGTTGAGCCCCCACAAGCACCCGCCGCACAAGTTGCAGGTTTTGAGTTTGAAGAAGGAGGGGAAGATCAATTCAAAGGGAGCTCTCAGGTTTCTCTTCAACTAGCGACCAACAAGGCCAAGATTCACGAGTGTTCGATATGTGGGTCGGAGTTTACGTCCGGACAAGCATTGGGTGGCCACATGAGGAGGCACAGAGCACCGGCCAACACCGCAGCCGCGGGATTGAAGCAAAGGAATGTTCTGGAATTGGATCTTAATTTGCCAGCGCCGGAGGACGATCTCCGGGATTCCAAGTTCCAGTTCACGGCGGCGCAGAAGTCTCTGGTGCTGTCTGCTTCGGCTTTGGTGGACTGCCATTATTGA 738 0.5447 MDVDGTDQLVGSTTSINVAKGKRTKRHRPFSASVTHSTSSSASADDNLSFNSSASATLDATEEEEEEDMANCLILLAQSGDAPHKQPPTTKNISGFYVYECRTCNKSFPSFQALGGHRASHKKPKVEPPQAPAAQVAGFEFEEGGEDQFKGSSQVSLQLATNKAKIHECSICGSEFTSGQALGGHMRRHRAPANTAAAGLKQRNVLELDLNLPAPEDDLRDSKFQFTAAQKSLVLSASALVDCHY 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0504 245 SUPERFAMILY beta-beta-alpha zinc fingers 98 189 IPR036236 -
Prci6g0504 245 Gene3D Classic Zinc Finger 96 189 - -
Prci6g0504 245 ProSitePatterns Zinc finger C2H2 type domain signature. 101 121 IPR013087 -
Prci6g0504 245 PANTHER ZINC FINGER PROTEIN ZAT5 52 229 - -
Prci6g0504 245 MobiDBLite consensus disorder prediction 31 50 - -
Prci6g0504 245 ProSitePatterns Zinc finger C2H2 type domain signature. 169 189 IPR013087 -
Prci6g0504 245 ProSiteProfiles Zinc finger C2H2 type domain profile. 167 194 IPR013087 -
Prci6g0504 245 MobiDBLite consensus disorder prediction 1 50 - -
Prci6g0504 245 ProSiteProfiles Zinc finger C2H2 type domain profile. 99 126 IPR013087 -
Prci6g0504 245 SMART c2h2final6 167 189 IPR013087 -
Prci6g0504 245 SMART c2h2final6 99 121 IPR013087 -
Prci6g0504 245 Pfam C2H2-type zinc finger 167 192 - -
Prci6g0504 245 Pfam C2H2-type zinc finger 98 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0504 Prci-Chr6 3288409 3289554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0504 5 245 C2H2 Transcription Factor Family AT2G28200 44.218 3.74e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci6g0504 zf-C2H2_6 1.1e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0504 - - pcin:129313806 414.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci7g2471 7 37299764 37300937 Prci6g0504 6 3288409 3289554 CCT
Prci7g2471 7 37299764 37300937 Prci6g0504 6 3288409 3289554 ECH
Prci6g0504 6 3288409 3289554 Prci6g0504 6 3288409 3289554 ECH