Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0503 ATGGAAACCCACTCTCTCCTCTCTTCCTCCTCTGAATCCCCTGTTCAGCATTTCGGCTGCAGACACTACAGAAGGAGCTGCAGGATCAGAGCACCCTGCTGCAATGAAATTTTTGGCTGTCGCCATTGTCATAATGAAGCTAAGAACTCCGACGAAGTCGATCCCATCCATCGTCACGATGTTCCCCGCCACGATATTACAAAGGTTATCTGTTCTTCATGCAATACAGAACAAGATGTTCAACAGTGTTGCATTAACTGTGGAATGTGCATGGGGAAGTACTTCTGCGCTACTTGCAAATTCTTCGATGATGATATTTCGAAGAAGCAATACCACTGTGATGAATGTGGCATCTGCAGAACTGGAGGCAAGGACAACTTTTTCCACTGTATGAGATGTGGCTGTTGCTACTCTAATGTGATGAAAGAAGGACACCGATGTGTCGAACGCGCAATGCATCACAATTGTCCCGTTTGTATTGAGTATCTATTTGATACCTTGCGAGACATTACCGTCTTGCCTTGCGGCCATACCATACATTTGGAGTGTGTTAGAGAGATGGAGAAACATTGCAGGTATTCATGCCCTGTTTGCTCAAAATCCATATGCGACATGTCAAGTCTTTGGAAGAAGCTTGACCAAGTGATTGCTTCAACACCAATGCCTGAAGCTTACAAAGACAAGATGGTGTGGATACTATGCAATGATTGTGGAGTGAACTCTCAAGTGCAATTCCACGTTGTTGCTCACAAGTGTTGGAAATGCAACTCTTACAACACAAGACGGAGACAAGGAAGCCCTAGCCCTGCGTGCACTTCTTCAGTGACCGAGATGGTGAGATGA 843 0.4531 METHSLLSSSSESPVQHFGCRHYRRSCRIRAPCCNEIFGCRHCHNEAKNSDEVDPIHRHDVPRHDITKVICSSCNTEQDVQQCCINCGMCMGKYFCATCKFFDDDISKKQYHCDECGICRTGGKDNFFHCMRCGCCYSNVMKEGHRCVERAMHHNCPVCIEYLFDTLRDITVLPCGHTIHLECVREMEKHCRYSCPVCSKSICDMSSLWKKLDQVIASTPMPEAYKDKMVWILCNDCGVNSQVQFHVVAHKCWKCNSYNTRRRQGSPSPACTSSVTEMVR 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0503 280 ProSiteProfiles Zinc finger CTCHY-type profile. 91 155 IPR017921 -
Prci6g0503 280 Pfam Zinc-ribbon 203 261 IPR039512 -
Prci6g0503 280 Gene3D - 229 267 - -
Prci6g0503 280 ProSiteProfiles Zinc finger RING-type profile. 156 199 IPR001841 -
Prci6g0503 280 SUPERFAMILY RING/U-box 154 204 - -
Prci6g0503 280 ProSiteProfiles Zinc finger CHY-type profile. 13 89 IPR008913 GO:0008270
Prci6g0503 280 Pfam CHY zinc finger 20 101 IPR008913 GO:0008270
Prci6g0503 280 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 228 IPR013083 -
Prci6g0503 280 SUPERFAMILY Zinc hairpin stack 92 149 IPR037275 -
Prci6g0503 280 SMART ring_2 156 198 IPR001841 -
Prci6g0503 280 Pfam Zinc finger, C3HC4 type (RING finger) 156 198 IPR018957 GO:0046872
Prci6g0503 280 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 14 265 - -
Prci6g0503 280 SUPERFAMILY CHY zinc finger-like 16 91 IPR037274 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0503 Prci-Chr6 3268053 3270746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0503 16 274 C2H2 Transcription Factor Family AT3G18290 38.951 2.89e-55 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0503 K10144 - gmx:100812709 495.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci6g0503 6 3268053 3270746 Prci6g0503 6 3268053 3270746 ECH