Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0481 ATGGGCAGAGCTCCCTGTTGCGACAAAGCAAATGTGAAGAAGGGTCCGTGGTCACCAGAAGAAGACTCCAAGCTGAAAGAGTACATCGACAAGAACGGGACTGGAGGTAATTGGATCGCTCTTCCTCAGAAAGCAGGTCTAAAAAGGTGCGGGAAAAGTTGCAGGTTGAGGTGGCTCAACTATCTGAGGCCCAACATTAAGCATGGAGAATTCACTGATGAGGAGGATAGAATAATATGCACCCTCTATGCTAATATTGGAAGCAGGTGGTCAATTATAGCAGCTCAGTTGCCAGGCAGGACGGACAATGATATTAAGAACTACTGGAACACCAAGCTCAAGAAGAAGCTCATGGGCTTGCTTCCTCCATCTAATCATCAGATCAGGAAACCTCCAGCATTATTTCAATCCTCTCATCATGATCAAAACCCACCATTTACTTCTCAGTCATCCTACAGAGACTTCAGCTCTTGCTACCCTTGCCCATCATCAACCATATCCTTCACCGGCCTCGAGTCAACTGCTGTTGTGCCTTCAACTTACAACACAACTTCATCGCCGACCACCAATTTTCCGTATTTTCAAAATCAAGAGGTCTCCTTGGTTAGTGGCCCAATGCAATACTACTGCATGTTTGGAAGTGAAGGAAGTTGCAGCACTTCGTCTGATGGAAGCTGCAGTCAAATCAGCCACGGCAGAGGAGACGTCAAACAAGAAGAAATGGGTTTTCAATTCCATCAACACAGCTACATGGCCAATGGTGGAGGTGGGCTTGAGTTCGGCAATAAGTTCATGCCCGGAGGTGAAAGTATTATTAACCAGTGGACAGAGAAGCCGAGTGGGTACTCGGGGCAAACCCCATTGATGGATTATGGAATTGAGGAGATAAGGCAGATGATCAGTGGTAATAATGGGATGTTTAATAATATTGAGGAAAACAAGAGAGAGGAGAAGGGGATGATGTACTACTACTACTGA 978 0.4581 MGRAPCCDKANVKKGPWSPEEDSKLKEYIDKNGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFTDEEDRIICTLYANIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMGLLPPSNHQIRKPPALFQSSHHDQNPPFTSQSSYRDFSSCYPCPSSTISFTGLESTAVVPSTYNTTSSPTTNFPYFQNQEVSLVSGPMQYYCMFGSEGSCSTSSDGSCSQISHGRGDVKQEEMGFQFHQHSYMANGGGGLEFGNKFMPGGESIINQWTEKPSGYSGQTPLMDYGIEEIRQMISGNNGMFNNIEENKREEKGMMYYYY 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0481 325 CDD SANT 70 111 IPR001005 -
Prci6g0481 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Prci6g0481 325 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Prci6g0481 325 PANTHER OS09G0431300 PROTEIN 1 298 - -
Prci6g0481 325 Gene3D - 69 142 - -
Prci6g0481 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Prci6g0481 325 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Prci6g0481 325 CDD SANT 16 62 IPR001005 -
Prci6g0481 325 FunFam Transcription factor RAX3 7 68 - -
Prci6g0481 325 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Prci6g0481 325 SMART sant 13 64 IPR001005 -
Prci6g0481 325 SMART sant 67 115 IPR001005 -
Prci6g0481 325 Gene3D - 7 68 - -
Prci6g0481 325 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Prci6g0481 325 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0481 Prci-Chr6 3153695 3155577 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0481 1 127 MYB Transcription Factor Family AT5G57620 85.827 2.50e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci6g0481 Myb_DNA-binding 4.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0481 K09422 - qsu:112023410 372.089