Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0453 ATGGCAAATTCTACAAGTTCTGATCGTAGGGATAAGGCTGATGAAAATAACAATGGAAGGTGTCTCAATGAGATGGGCAGAATCAACTCAGGCTCTTCTATGAAAGATGCCACTGGTCCTAGAAGGTCTATCAGAGAAACTTCATCAAAGAAGACGACTCCTAGTCCCTCAAGTACTCGAAAGTCTGAACGACTTGGAAAGAGTACACCACTAAATCCTCCTGTCAGAAGGAAGTCTGAAAGGGTTGAGAAACAGAAGATGCCAAATTCTTTGAGGAGATCTAAAAGAACTAAGAATCACTCTGATATAGCTTCTTCAGGTTCTAAGGGCTTTGACTCGTTAGCTCAAAAGCAGAAAAAGAAAAAAAAACACAAGAGTGTAAAAAAATTAACATTTGAAGCTGAAAAAGCTGAAAATGAAGAATGTGAAGGAGAAACTTCTCAGGTAAAGAGGAAGAGAATGAATGCTCGTGCTTACCGGGCCATGATAAAGAAAAAGCCAAAAATAGATTGTCCTGAGGAGACAAATGGTAAAGGTAATTTAATTCCAGGTGGTGGCAACAATGTTGAGGGCAAGATTGATGAACGCTTCAAAGGAAGTAATTTAGTTTGTAAAGAAGCTGCCAAGAATGAAATGCTACCATCTGATGATGCCAAGGAGTTAGCTAACCTTTCTGCTATTAAGGTTAGAGTTGAAATTGAAGCCACCTTTGCTGCAGAAATTTCTGAGAAAGGTGTTGACTGCTCGCCTTCAAACGATGTCTCTATAGAGATCCAATCAGATGATGGAAAAATATGTCTCATTTGCCAATGTGGTGGGCAGCTCTTATTTTGCGATGGAAAAGAATGTGATGGATGCTACCATTTTTCTTGTCTTGAACCTCCCATGGTGGATGCTCCCCTTGGAGTTTGGCATTGTAACCTCTGCTTGAAGAAGAAGATAGAGTTTGGTGTATATTCTGTGTCTGAGGGAGTAGAATCAATTTGGGATACCAGAGAAGTCAAGGTGTCTCATGCTGAGGGATTGACAACTGAGAAACATTTTCTCGTGAAGTATAAAGGCCTTGCTCATGTTCACAACCGTTGGGTCTCAGAAAGTCAGTTACTTCTTGAAGCTCCTCCGTTGTTGCTTGAGAAATTTAATCAGAAAGATCAGGCCCTAAAGTGGAAGCTAGAATGGAGCATACCTCATCGCTTGCTTCAGAAGAGAGCATTAATCTTTGCCAATGATGGTCATCCCAGGAGTGGCCAAGCTGTTGGCAATTCTCAATGTCATTATGAATGGCTTGTTAAATGGCATGGTCTTGGTTATGAAGATGCATCATGGGAGCTGGACAATGCTCCGTTTCTTCGTTCACTTGAAGGTCAGAGGCTAATTAAAGACTATGAAGATCGTCATCAGAGGGCAAAGAGAGTTCCTTTATCATCCAAAGCAGATAAGAAACTAGACCGCATAAGTTCTTTTAGCAAATTATCTCAGACACCTGGTGGATTTCCGCCTGGATTTGGTGTAAACAATTTGGATGCAGTTAACAAGCTACGTGAGCATTGGCATAAGGGTCAGAATGCTGTTATATTTGATGACCATGACAGAATGGTGAAAGTGGTTGCATTTATCTTATCTTTGGACTCTAATACTTGTCAACCTTTTCTCATTATCTCAACCTCAGCTGCTCTCCATTTATGGGAGGATGAGTTTTCTTGTTGGGCACCATCTCTCAATGTTATTATTTACGGTGGAAACAAAGAGATTCGTAGAAGTATTCGGAAACTAGAATTTTATGGGGAAGGAGGCTGTTTGCTTTTCCAAGTACTTATAGTACTTCCAGAGATCATCATCGAGGATCTAGAGGTTTTAGAAGGCATAGAATTTGAAGCAATCTTAGTTGATGAGTGCCAGTGCTCAAAGATCTCATCTTATTCGAAACAAATTAAAATGTTAAAGACAGATTTGTGGATTCTTCTTCTTAGTGGCCAACTAAAGGATAGTGTTGTAGAATATCACGATATCCTGGCACTTCTTCATCATCGGAATTACAATGAAAAGAATGATGATTTAATCTCCAATTCCAGTGATATTGGTCAACTGAAGGATAAACTATCAAGTTTTGTTGCATATAGATGCAAATCAGACTCCTTTAGGTTTGTTGAGTATTGGATTCCTGTAAATATATCCAATGTGCAACTTGAGCAGTATTGTGCTGCTTTACTTTCAAACTCTTCAATACTCCGTTCTCAATCGAAATCTCATGTTGTTGGGGCGCTTCATGATATTCTTGTTACTACCCGGAAGTGTTGTAATCACCCCTACCTTGTTGATGAATCCCTACAAAGTTTACTTATCAAAGATCTTCCACCAGCTGAGATCCTGGATGTTGGAATAAAAGCAAGTGCGAAGCTGCAACTTCTTGATTCCATGCTCATGGAATTGAAAAAACAAGGTTTGAGGGTGCTTATTCTTTTCCAGTTTTTAGGTGGTTCTGGGAAGGTTTCAATTGGAGATATTTTGGATGACTTAATACGTCAAAGATTTGGTCCAGATTCTTATGAAAGAATTGACAAAGGTGTTTTGAATTCTAAGAAGCAAAGTGCTCTGAAAATGTTTAACAACAAGGACCACGGGAGATTTGTATTTTTATTGGAGGCCAATGCTTGCCATCAAAGCATCAAATTGTCATCAGTTGATACCATTATCATATTTGATAGTGATTGGAACCCATTGAATGATATAAGATCCCTTCAGAAAATAACACTTGATTCACAGTTGGAACAGATTAAAATATTTCGGTTATATTCATCTTTCACTGTTGAAGAAAGAGCCCTAGTCCTTGCTAAGCAGGATAGACCACTTGATACCAAATTTGACATAAGTTGGAGTACCAGTCACACACTATTGATGTGGGGGGCATCGTCTTTATTTGATGATTTAAAAGCTTTTCATGATGGTAAAACTGATTTCTTAAGTGTGGATTCCTTATCTGGACAATTATCTTTAAAACATGCTCTACATGAATTTTCATTCGTACTTAAGCAAAATGGTGAAGATAATGATGCAAGGGACTGCTCCTTTTTATTGAAAGTCAAGCAAAATGGAGTAAAATACCACCCAAATTTTTCTTTGCTTGGTGAGTGGAAATTTAAATCACTGGATTTAGAGCCATGCCACTTGTTTTGGACAAAAGTTTTGGAGGGAAAAAATCCACGGTGGAAATACTCATGTGGTTCATCTCAAAGGAGCCGAAAAAGGGTTCAGCATTTTGATTCAGGAAATAGACCTGACCTTGAGAATGAAGAGGTAGTGAAAAAGCGTTCAAAACTGATAAATAATGCTGATCAGCCTTATTCAAAACATGAAGGTGAACAATTATCTGCCAGAAACAAGGAAGGAAATTCTGGAGAACCAATGGAAAGACCTCAAGGCAATGATGTTGAATTCTTGAAAGCAAGGAAGTCACGTAATGAGCAGAGGAGCTTACATCTTTCTCTGAAGTCAGAAATAGCTAAGCTTTGTGAAATCCTACATGTCCCAGATAATGTCAGGAGGATGGCTGATGAATTTCTTGAGTATGTCATGGGCAACCACCATGTGAATAGTACTCTTCCAAAGTCAATACTGGAGGCTTTTCAAATTTCTCTGGTCAGAATTGTTGGACTGCAGCTGCTTTGGTAA 3669 0.3892 MANSTSSDRRDKADENNNGRCLNEMGRINSGSSMKDATGPRRSIRETSSKKTTPSPSSTRKSERLGKSTPLNPPVRRKSERVEKQKMPNSLRRSKRTKNHSDIASSGSKGFDSLAQKQKKKKKHKSVKKLTFEAEKAENEECEGETSQVKRKRMNARAYRAMIKKKPKIDCPEETNGKGNLIPGGGNNVEGKIDERFKGSNLVCKEAAKNEMLPSDDAKELANLSAIKVRVEIEATFAAEISEKGVDCSPSNDVSIEIQSDDGKICLICQCGGQLLFCDGKECDGCYHFSCLEPPMVDAPLGVWHCNLCLKKKIEFGVYSVSEGVESIWDTREVKVSHAEGLTTEKHFLVKYKGLAHVHNRWVSESQLLLEAPPLLLEKFNQKDQALKWKLEWSIPHRLLQKRALIFANDGHPRSGQAVGNSQCHYEWLVKWHGLGYEDASWELDNAPFLRSLEGQRLIKDYEDRHQRAKRVPLSSKADKKLDRISSFSKLSQTPGGFPPGFGVNNLDAVNKLREHWHKGQNAVIFDDHDRMVKVVAFILSLDSNTCQPFLIISTSAALHLWEDEFSCWAPSLNVIIYGGNKEIRRSIRKLEFYGEGGCLLFQVLIVLPEIIIEDLEVLEGIEFEAILVDECQCSKISSYSKQIKMLKTDLWILLLSGQLKDSVVEYHDILALLHHRNYNEKNDDLISNSSDIGQLKDKLSSFVAYRCKSDSFRFVEYWIPVNISNVQLEQYCAALLSNSSILRSQSKSHVVGALHDILVTTRKCCNHPYLVDESLQSLLIKDLPPAEILDVGIKASAKLQLLDSMLMELKKQGLRVLILFQFLGGSGKVSIGDILDDLIRQRFGPDSYERIDKGVLNSKKQSALKMFNNKDHGRFVFLLEANACHQSIKLSSVDTIIIFDSDWNPLNDIRSLQKITLDSQLEQIKIFRLYSSFTVEERALVLAKQDRPLDTKFDISWSTSHTLLMWGASSLFDDLKAFHDGKTDFLSVDSLSGQLSLKHALHEFSFVLKQNGEDNDARDCSFLLKVKQNGVKYHPNFSLLGEWKFKSLDLEPCHLFWTKVLEGKNPRWKYSCGSSQRSRKRVQHFDSGNRPDLENEEVVKKRSKLINNADQPYSKHEGEQLSARNKEGNSGEPMERPQGNDVEFLKARKSRNEQRSLHLSLKSEIAKLCEILHVPDNVRRMADEFLEYVMGNHHVNSTLPKSILEAFQISLVRIVGLQLLW 1222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0453 1222 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 716 950 IPR027417 -
Prci6g0453 1222 Gene3D - 398 474 - -
Prci6g0453 1222 Coils Coil 120 140 - -
Prci6g0453 1222 CDD SF2_C_SNF 784 906 - -
Prci6g0453 1222 ProSitePatterns Zinc finger PHD-type signature. 266 309 IPR019786 -
Prci6g0453 1222 MobiDBLite consensus disorder prediction 1105 1141 - -
Prci6g0453 1222 Gene3D - 715 951 IPR027417 -
Prci6g0453 1222 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 802 965 IPR001650 -
Prci6g0453 1222 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 48 1201 - -
Prci6g0453 1222 SUPERFAMILY Chromo domain-like 282 386 IPR016197 -
Prci6g0453 1222 SMART PHD_3 265 310 IPR001965 -
Prci6g0453 1222 MobiDBLite consensus disorder prediction 49 66 - -
Prci6g0453 1222 SUPERFAMILY FYVE/PHD zinc finger 253 313 IPR011011 -
Prci6g0453 1222 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 514 678 IPR014001 -
Prci6g0453 1222 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 544 681 IPR027417 -
Prci6g0453 1222 ProSiteProfiles Chromo and chromo shadow domain profile. 323 392 IPR000953 -
Prci6g0453 1222 ProSiteProfiles Zinc finger PHD-type profile. 263 312 IPR019787 -
Prci6g0453 1222 MobiDBLite consensus disorder prediction 1 129 - -
Prci6g0453 1222 Gene3D - 507 714 IPR038718 -
Prci6g0453 1222 MobiDBLite consensus disorder prediction 74 102 - -
Prci6g0453 1222 SUPERFAMILY Chromo domain-like 422 466 IPR016197 -
Prci6g0453 1222 MobiDBLite consensus disorder prediction 22 37 - -
Prci6g0453 1222 Pfam SNF2-related domain 533 772 IPR000330 GO:0005524|GO:0140658
Prci6g0453 1222 SMART chromo_7 322 385 IPR000953 -
Prci6g0453 1222 SMART chromo_7 392 467 IPR000953 -
Prci6g0453 1222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 317 IPR013083 -
Prci6g0453 1222 Gene3D - 324 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0453 Prci-Chr6 2908005 2937442 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Prci6g0453 SNF2_N 8.8e-10 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0453 K11643 - qsa:O6P43_000346 1162.9