Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0452 ATGGCAAATTCTACAAGTTCTGATCGTAGGGATAAGGCTGATGAAAATAACAATGGAAGGTGTCTCAATGAGATGGGCAGAATCAACTCAGGCTCTTCTATGAAAGATGCCACTGGTCCTAGAAGGTCTATCAGAGAAACTTCATCAAAGAAGACGACTCCTAGTCCCTCAAGTACTCGAAAGTCTGAACGACTTGGAAAGAGTACACCACTAAATCCTCCTGTCAGAAGGAAGTCTGAAAGGGTTGAGAAACAGAAGATGCCAAATTCTTTGAGGAGATCTAAAAGAACTAAGAATCACTCTGATATAGCTTCTTCAGGTTCTAAGGGCTTTGACTCGTTAGCTCAAAAGCAGAAAAAGAAAAAAAAACACAAGAGTGTAAAAAAATTAACATTTGAAGCTGAAAAAGCTGAAAATGAAGAATGTGAAGGAGAAACTTCTCAGGTAAAGAGGAAGAGAATGAATGCTCGTGCTTACCGGGCCATGATAAAGAAAAAGCCAAAAATAGATTGTCCTGAGGAGACAAATGGTAAAGGTAATTTAATTCCAGGTGGTGGCAACAATGTTGAGGGCAAGATTGATGAACGCTTCAAAGGAAGTAATTTAGTTTGTAAAGAAGCTGCCAAGAATGAAATGCTACCATCTGATGATGCCAAGGAGTTAGCTAACCTTTCTGCTATTAAGGTTAGAGTTGAAATTGAAGCCACCTTTGCTGCAGAAATTTCTGAGAAAGGTGTTGACTGCTCGCCTTCAAACGATGTCTCTATAGAGATCCAATCAGATGATGGAAAAATATGTCTCATTTGCCAATGTGGTGGGCAGCTCTTATTTTGCGATGGAAAAGAATGTGATGGATGCTACCATTTTTCTTGTCTTGAACCTCCCATGGTGGATGCTCCCCTTGGAGTTTGGCATTGTAACCTCTGCTTGAAGAAGAAGATAGAGTTTGGTGTATATTCTGTGTCTGAGGGAGTAGAATCAATTTGGGATACCAGAGAAGTCAAGGTGTCTCATGCTGAGGGATTGACAACTGAGAAACATTTTCTCGTGAAGTATAAAGGCCTTGCTCATGTTCACAACCGTTGGGTCTCAGAAAGTCAGTTACTTCTTGAAGCTCCTCCGTTGTTGCTTGAGAAATTTAATCAGAAAGATCAGGCCCTAAAGTGGAAGCTAGAATGGAGCATACCTCATCGCTTGCTTCAGAAGAGAGCATTAATCTTTGCCAATGATGGTCATCCCAGGAGTGGCCAAGCTGTTGGCAATTCTCAATGTCATTATGAATGGCTTGTTAAATGGCATGGTCTTGGTTATGAAGATGCATCATGGGAGCTGGACAATGCTCCGTTTCTTCGTTCACTTGAAGGTCAGAGGCTAATTAAAGACTATGAAGATCGTCATCAGAGGGCAAAGAGAGTTCCTTTATCATCCAAAGCAGATAAGAAACTAGACCGCATAAGTTCTTTTAGCAAATTATCTCAGACACCTGGTGGATTTCCGCCTGGATTTGGTGTAAACAATTTGGATGCAGTTAACAAGCTACGTGAGCATTGGCATAAGGGTCAGAATGCTGTTATATTTGATGACCATGACAGAATGGTGAAAGTGGTTGCATTTATCTTATCTTTGGACTCTAATACTTGTCAACCTTTTCTCATTATCTCAACCTCAGCTGCTCTCCATTTATGGGAGGATGAGTTTTCTTGTTGGGCACCATCTCTCAATGTTATTATTTACGGTGGAAACAAAGAGATTCGTAGAAGTATTCGGAAACTAGAATTTTATGGGGAAGGAGGCTGTTTGCTTTTCCAAGTACTTATAGTACTTCCAGAGATCATCATCGAGGATCTAGAGGTTTTAGAAGGCATAGAATTTGAAGCAATCTTAGTTGATGAGTGCCAGTGCTCAAAGATCTCATCTTATTCGAAACAAATTAAAATGTTAAAGACAGATTTGTGGATTCTTCTTCTTAGTGGCCAACTAAAGGATAGTGTTGTAGAATATCACGATATCCTGGCACTTCTTCATCATCGGAATTACAATGAAAAGAATGATGATTTAATCTCCAATTCCAGTGATATTGGTCAACTGAAGGATAAACTATCAAGTTTTGTTGCATATAGATGCAAATCAGACTCCTTTAGGTTTGTTGAGTATTGGATTCCTGTAAATATATCCAATGTGCAACTTGAGCAGTATTGTGCTGCTTTACTTTCAAACTCTTCAATACTCCGTTCTCAATCGAAATCTCATGTTGTTGGGGCGCTTCATGATATTCTTGTTACTACCCGGAAGTGTTGTAATCACCCCTACCTTGTTGATGAATCCCTACAAAGTTTACTTATCAAAGATCTTCCACCAGCTGAGATCCTGGATGTTGGAATAAAAGCAAGTGCGAAGCTGCAACTTCTTGATTCCATGCTCATGGAATTGAAAAAACAAGGTTTGAGGGTGCTTATTCTTTTCCAGTTTTTAGGTGGTTCTGGGAAGGTTTCAATTGGAGATATTTTGGATGACTTAATACGTCAAAGATTTGGTCCAGATTCTTATGAAAGAATTGACAAAGGTGTTTTGAATTCTAAGAAGCAAAGTGCTCTGAAAATGTTTAACAACAAGGACCACGGGAGATTTGTATTTTTATTGGAGGCCAATGCTTGCCATCAAAGCATCAAATTGTCATCAGTTGATACCATTATCATATTTGATAGTGATTGGAACCCATTGAATGATATAAGATCCCTTCAGAAAATAACACTTGATTCACAGTTGGAACAGATTAAAATATTTCGGTTATATTCATCTTTCACTGTTGAAGAAAGAGCCCTAGTCCTTGCTAAGCAGGATAGACCACTTGATACCAAATTTGACATAAGTTGGAGTACCAGTCACACACTATTGATGTGGGGGGCATCGTCTTTATTTGATGATTTAAAAGCTTTTCATGATGGTAAAACTGATTTCTTAAGTGTGGATTCCTTATCTGGACAATTATCTTTAAAACATGCTCTACATGAATTTTCATTCGTACTTAAGCAAAATGGTGAAGATAATGATGCAAGGGACTGCTCCTTTTTATTGAAAGTCAAGCAAAATGGAGTAAAATACCACCCAAATTTTTCTTTGCTTGGTGAGTGGAAATTTAAATCACTGGATTTAGAGCCATGCCACTTGTTTTGGACAAAAGTTTTGGAGGGAAAAAATCCACGGTGGAAATACTCATGTGGTTCATCTCAAAGGAGCCGAAAAAGGGTTCAGCATTTTGATTCAGGAAATAGACCTGACCTTGAGAATGAAGAGGTAGTGAAAAAGCGTTCAAAACTGATAAATAATGCTGATCAGCCTTATTCAAAACATGAAGGTGAACAATTATCTGCCAGAAACAAGGAAGGAAATTCTGGAGAACCAATGGAAAGACCTCAAGGCAATGATGTTGAATTCTTGAAAGCAAGGAAGTCACGTAATGAGCAGAGGAGCTTACATCTTTCTCTGAAGTCAGAAATAGCTAAGCTTTGTGAAATCCTACATGTCCCAGATAATGTCAGGAGGATGGCTGATGAATTTCTTGAGTATGTCATGGGCAACCACCATGTGAATAGTACTCTTCCAAAGTCAATACTGGAGGCTTTTCAAATTTCTCTGTGTTGGACTGCAGCTGCTTTGGTAAAGCACAAGATTGACCATGAAGCTTCCCTCATGCTTGCAAAACAGAATTTAAAATTTGGTTGCAGGAAGGATGAGGCAAACTTAATTTATTCAATGTTGCGGTGTCTGAAGAATATATTTTTGCATCGAACAGGAAACTACAATGTCACTGGCTCTCCAAAAGCTTCTGGATCTGAATTATCTGGTAAGAATTATTCCTGTATGGGCTTGGCGCTAGAGGTTGAATTGGCTAAGAAAGATGTCTCAAAAAGCATCAAAGAAATTCAAAAGAAGTGCCAAAAGAAGTTGAGGAAGTTACTCCTTAAGCATCAAGAAGAAAAGAAGAAGTTGGACGCAACATATGAGGAAAAAAGGGCTGATCTTGAGAAAAAATACAAAATAGAATCAGCCGTTATTCGATCCTCTTCTCCCAATGATGTGATGAGATCAGAAAAGCTTAAGGCTTTAGATATTGAATATACTGGAAGAATTGAAGATTTGAAGCATCAGCATCAAATACATCTCAAAGATCTTGAGGATGACCTATTGAAAGCAAGGCAAACGTTACAAAATTGGCAGGCTACTTGGGTGGAAGATGTGAAGTCTTGGGCACAAGATGAATTGTTAAACACACTTCCTTTGAAAGAACGTGAGAATAGCATACTTGAGGACTAG 4314 0.3876 MANSTSSDRRDKADENNNGRCLNEMGRINSGSSMKDATGPRRSIRETSSKKTTPSPSSTRKSERLGKSTPLNPPVRRKSERVEKQKMPNSLRRSKRTKNHSDIASSGSKGFDSLAQKQKKKKKHKSVKKLTFEAEKAENEECEGETSQVKRKRMNARAYRAMIKKKPKIDCPEETNGKGNLIPGGGNNVEGKIDERFKGSNLVCKEAAKNEMLPSDDAKELANLSAIKVRVEIEATFAAEISEKGVDCSPSNDVSIEIQSDDGKICLICQCGGQLLFCDGKECDGCYHFSCLEPPMVDAPLGVWHCNLCLKKKIEFGVYSVSEGVESIWDTREVKVSHAEGLTTEKHFLVKYKGLAHVHNRWVSESQLLLEAPPLLLEKFNQKDQALKWKLEWSIPHRLLQKRALIFANDGHPRSGQAVGNSQCHYEWLVKWHGLGYEDASWELDNAPFLRSLEGQRLIKDYEDRHQRAKRVPLSSKADKKLDRISSFSKLSQTPGGFPPGFGVNNLDAVNKLREHWHKGQNAVIFDDHDRMVKVVAFILSLDSNTCQPFLIISTSAALHLWEDEFSCWAPSLNVIIYGGNKEIRRSIRKLEFYGEGGCLLFQVLIVLPEIIIEDLEVLEGIEFEAILVDECQCSKISSYSKQIKMLKTDLWILLLSGQLKDSVVEYHDILALLHHRNYNEKNDDLISNSSDIGQLKDKLSSFVAYRCKSDSFRFVEYWIPVNISNVQLEQYCAALLSNSSILRSQSKSHVVGALHDILVTTRKCCNHPYLVDESLQSLLIKDLPPAEILDVGIKASAKLQLLDSMLMELKKQGLRVLILFQFLGGSGKVSIGDILDDLIRQRFGPDSYERIDKGVLNSKKQSALKMFNNKDHGRFVFLLEANACHQSIKLSSVDTIIIFDSDWNPLNDIRSLQKITLDSQLEQIKIFRLYSSFTVEERALVLAKQDRPLDTKFDISWSTSHTLLMWGASSLFDDLKAFHDGKTDFLSVDSLSGQLSLKHALHEFSFVLKQNGEDNDARDCSFLLKVKQNGVKYHPNFSLLGEWKFKSLDLEPCHLFWTKVLEGKNPRWKYSCGSSQRSRKRVQHFDSGNRPDLENEEVVKKRSKLINNADQPYSKHEGEQLSARNKEGNSGEPMERPQGNDVEFLKARKSRNEQRSLHLSLKSEIAKLCEILHVPDNVRRMADEFLEYVMGNHHVNSTLPKSILEAFQISLCWTAAALVKHKIDHEASLMLAKQNLKFGCRKDEANLIYSMLRCLKNIFLHRTGNYNVTGSPKASGSELSGKNYSCMGLALEVELAKKDVSKSIKEIQKKCQKKLRKLLLKHQEEKKKLDATYEEKRADLEKKYKIESAVIRSSSPNDVMRSEKLKALDIEYTGRIEDLKHQHQIHLKDLEDDLLKARQTLQNWQATWVEDVKSWAQDELLNTLPLKERENSILED 1437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0452 1437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 317 IPR013083 -
Prci6g0452 1437 Coils Coil 120 140 - -
Prci6g0452 1437 CDD SF2_C_SNF 784 906 - -
Prci6g0452 1437 ProSitePatterns Zinc finger PHD-type signature. 266 309 IPR019786 -
Prci6g0452 1437 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 545 681 IPR027417 -
Prci6g0452 1437 Pfam SNF2-related domain 533 772 IPR000330 GO:0005524|GO:0140658
Prci6g0452 1437 Coils Coil 1313 1340 - -
Prci6g0452 1437 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 48 1370 - -
Prci6g0452 1437 SUPERFAMILY Chromo domain-like 422 466 IPR016197 -
Prci6g0452 1437 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 802 965 IPR001650 -
Prci6g0452 1437 SMART PHD_3 265 310 IPR001965 -
Prci6g0452 1437 MobiDBLite consensus disorder prediction 49 66 - -
Prci6g0452 1437 Gene3D - 324 387 - -
Prci6g0452 1437 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 514 678 IPR014001 -
Prci6g0452 1437 MobiDBLite consensus disorder prediction 1105 1142 - -
Prci6g0452 1437 Gene3D - 507 714 IPR038718 -
Prci6g0452 1437 SUPERFAMILY Chromo domain-like 282 386 IPR016197 -
Prci6g0452 1437 Gene3D - 715 951 IPR027417 -
Prci6g0452 1437 ProSiteProfiles Chromo and chromo shadow domain profile. 323 392 IPR000953 -
Prci6g0452 1437 ProSiteProfiles Zinc finger PHD-type profile. 263 312 IPR019787 -
Prci6g0452 1437 SUPERFAMILY FYVE/PHD zinc finger 253 313 IPR011011 -
Prci6g0452 1437 Coils Coil 1381 1408 - -
Prci6g0452 1437 Gene3D - 398 474 - -
Prci6g0452 1437 MobiDBLite consensus disorder prediction 1 129 - -
Prci6g0452 1437 MobiDBLite consensus disorder prediction 74 102 - -
Prci6g0452 1437 MobiDBLite consensus disorder prediction 22 37 - -
Prci6g0452 1437 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 716 950 IPR027417 -
Prci6g0452 1437 SMART chromo_7 392 467 IPR000953 -
Prci6g0452 1437 SMART chromo_7 322 385 IPR000953 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0452 Prci-Chr6 2907499 2937442 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Prci6g0452 SNF2_N 1.2e-09 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0452 K11643 - aprc:113854369 1359.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci6g0452 6 2907499 2937442 Prci6g0452 6 2907499 2937442 ECH