Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0449 ATGGGAAGCAAATGGAGAAAGCTGAAGCTGGCTCTTGGATTGAATATTTGTGTTCATGTTCCTAGAGATATAGACAATTCGTCGTCTCTCAACTCCGCAACAAGATTTATCGATTCGTGCTCGCCATCTGATGTTTCTCCGGCCGGTGATAGCTCCGGCCATGGCCCAACCACTCCGACTCCTTCCTCCTCTGGTCTTCTGCTTACAAAATCCGGATCCAAATCATCCAAGGGGACATGTGCAATATGCTTGACCACAATGAAAGCAGGGCATGGCCATGCCATTTTTACTGCAGAATGCTCTCACTCCTTCCATTTTCACTGTATCACATCTAATGTAAAACATGGAAACCAAGTTTGCCCTGTCTGCCGAGCCAAATGGAAAGAAGTGCCTTTTGAAAGTCCTGTTTGTAATGTTTCATATGGAATGCCTCGTATCAACCAAACTCCCCGAGATAACTCCTGGACAACAATCTTCCGACGGCTTCCTTCCCAACCAGTGGATTCAAGTAGGCAAATTACATCACTCTATAATGTTACTGAACCAGCTATTTTTGATGATGATGAGGATTTGGATCAACAAACTTCAATGACCCACAATGAAAATGAGGCTAATCACAATTCATTAGATTCCATGGAGATTAGAACGTATCCTGAAGTTTCAGCTGTTCCAAAATTAGCCTCACATGATGAATTTGCTGTGTTAATCCATCTCAAAGCTCCTCATTCAGTCGGAAAACAAAATAGTGTCAGCAACAATACTGAATCATCACCTTCTGCTCAAACTTCTCGTGCTTCAATTGACCTTGTCACTGTCCTTGATGTAAGTGGTAGCATGGCAGGTACTAAGCTTGCACTGCTTAAACGAGCTATGGGTTTTGTCATACAGAATCTAGGTCCATCAGATCGGCTATCTGTCATTGCCTTCTCCTCCACAGCACGCCGTATCTTTCCACTTCATCGGATGACTGAATCTGGACGTCAGCAGGCATTACAAGCGGTTAATTCTTTAATTTCTAGTGGTGGGACAAACATTGCAGAAGGCCTGAGGAAAGGTGCTAAAGTGTTTGCAGATCGTCGATGGAAGAACCCAGTTTGCAGTATTATATTACTGTCTGACGGTCAGGATACATACACAATCAGCAGCAGGCCCAATGCTGGAACTACCTATCCATCACTGCTCCCAAACTCCATCAGTCGAAATAATGGTGTGGGCTTGCAGATACCAGTGCATGCATTTGGTTTTGGTGCCGATCATGATGCTACTTCAATGCACTCAATCTCTGAGATGTCTGGGGGTACATTTTCTTTCATTGAAGCTGAGGACGTAATTCAAGATGCATTTGCACAGTGTATTGGGGGACTTTTGAGTGTGGTGGTGCAGGAATTACAAGTTAAGGTTGAGTGTGTACACCCTTCTCTGCAGCTGGGTTCAGTAAAAGCAGGAAGTTACCAAACCAGCATAATGGCTGATGCAAGGATGGCTACTATCAACGTAGGGGATTTGTATGCTGAAGAAGAAAGAGATTTTTTGGTGACAGTCAATGTTCCCATTGACAAGTCTTGTGATGAGATGTCATTATTGATCGTCAGAGGTCTTTATAGAGACCCACTCACAAAAGAGATGGTGGCTTTGGAGGAGAGTAGCAAAGTAAAAATCCAGAGACCTGAGGTTGCTGGAGAACTAGTAGTGTCAATAGAGGTAGACAGGCAGCGAAACAGGCTTCGTGCTGCAGAGGCCATGGCTGAGGCCAGAGTTGCGGCTGAACGTGGTGATTTAACTACTGCAGTTTCTATCCTCGAGAGCTGTCACAAGGCATTGTCTGAAACTGTATCTGCCCAAGCAGGTGATCGATTAATTGTTTCTCTTTCTGCTGAGCTAAAAGAGATGCAAGAGAGGATGGCTGACCAACGTGTGTATCAGCAGTCTGGGAGGGCTTATGTTCTATCAGGATTGAGTTCCCATTCGTGGCAAAGGGCTACTACACGCGGTGATTCTACAGACGGCACTAGTCTTGTTCAAACATATCAAACCCCATCCATGGTAGACATGGTGACTCGTTCCCAAACCATGATTTTGGGGACGTCACAACAACCTCGTCGTTTTCTCCGGCCTGCTAAATCATTTCCTCAACGGCAGCGAGGGCAGTAA 2151 0.4505 MGSKWRKLKLALGLNICVHVPRDIDNSSSLNSATRFIDSCSPSDVSPAGDSSGHGPTTPTPSSSGLLLTKSGSKSSKGTCAICLTTMKAGHGHAIFTAECSHSFHFHCITSNVKHGNQVCPVCRAKWKEVPFESPVCNVSYGMPRINQTPRDNSWTTIFRRLPSQPVDSSRQITSLYNVTEPAIFDDDEDLDQQTSMTHNENEANHNSLDSMEIRTYPEVSAVPKLASHDEFAVLIHLKAPHSVGKQNSVSNNTESSPSAQTSRASIDLVTVLDVSGSMAGTKLALLKRAMGFVIQNLGPSDRLSVIAFSSTARRIFPLHRMTESGRQQALQAVNSLISSGGTNIAEGLRKGAKVFADRRWKNPVCSIILLSDGQDTYTISSRPNAGTTYPSLLPNSISRNNGVGLQIPVHAFGFGADHDATSMHSISEMSGGTFSFIEAEDVIQDAFAQCIGGLLSVVVQELQVKVECVHPSLQLGSVKAGSYQTSIMADARMATINVGDLYAEEERDFLVTVNVPIDKSCDEMSLLIVRGLYRDPLTKEMVALEESSKVKIQRPEVAGELVVSIEVDRQRNRLRAAEAMAEARVAAERGDLTTAVSILESCHKALSETVSAQAGDRLIVSLSAELKEMQERMADQRVYQQSGRAYVLSGLSSHSWQRATTRGDSTDGTSLVQTYQTPSMVDMVTRSQTMILGTSQQPRRFLRPAKSFPQRQRGQ 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0449 716 MobiDBLite consensus disorder prediction 694 716 - -
Prci6g0449 716 ProSiteProfiles VWFA domain profile. 268 452 IPR002035 -
Prci6g0449 716 Pfam Ring finger domain 79 124 IPR001841 -
Prci6g0449 716 SUPERFAMILY RING/U-box 75 131 - -
Prci6g0449 716 Gene3D von Willebrand factor, type A domain 268 453 IPR036465 -
Prci6g0449 716 SMART VWA_4 266 448 IPR002035 -
Prci6g0449 716 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 78 690 - -
Prci6g0449 716 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 132 IPR013083 -
Prci6g0449 716 ProSiteProfiles Zinc finger RING-type profile. 80 124 IPR001841 -
Prci6g0449 716 MobiDBLite consensus disorder prediction 244 263 - -
Prci6g0449 716 Pfam VWA / Hh protein intein-like 617 690 IPR032838 -
Prci6g0449 716 CDD vWA_C3HC4_type 267 439 - -
Prci6g0449 716 CDD RING-H2_WAVH2 74 129 - -
Prci6g0449 716 MobiDBLite consensus disorder prediction 41 75 - -
Prci6g0449 716 SUPERFAMILY vWA-like 264 452 IPR036465 -
Prci6g0449 716 SMART ring_2 80 123 IPR001841 -
Prci6g0449 716 Pfam von Willebrand factor type A domain 268 449 IPR002035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0449 Prci-Chr6 2873905 2879343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0449 52 124 C3H Transcription Factor Family AT5G41440 30.137 9.03e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0449 - - gmx:100818406 1074.31