Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0423 ATGGGTATCAACAACATGAAGGATTCTTGGTTTTTTGACAAGAATTTTAATGGTTTGTCGGATGAAATTTTTGATGATGTCATCAAATTTTTTGATTTCCCGCTGGAAGATGTGGAAGCTAATGCCATGGAAGAAGATTGGGATGCCCAATTCAAATGCCTTGAAGAGCCATATTTTGATGCTTTCTCCATCTCGCCTTCTGGGCTTTGTGATAAAACTCGAAAAGGCAATCCTAAACTTGAGAGGATCTCTACTACTCGTGCTGAGATTTCCCCAATAGAAGTGCCAGAGACGACGAAACTGGCATATATCAAAAGCGTTCCCAATCCAAAAGTCTCTTCCAACGGCAAAGATATCTTCCAATTCCAGATCTACAGTCCAGTCTCTGTTTTTGAAAGCAGCAGTTCTTCATCAGGCGAGAATGCCTCCGATCAGCCTGTCATCCGAAAGCGAGCTCGCAGCAAACGACGACCTCTCTCAATCCTCAGTCCTCTATTCTCAGTTCCTTTCATCTCTTCTTCACGAGCATTCCAAAAACCTCGGAGGGCAGCTGCTGCTGAGTCGGATTTTGAAACATTCCTCAGTTGGAAACCATCTCACGGTCCGAAAGAGAAGCAGAGGAAAAAGGATGTCTCTGGTCTTACTAATATGAAGAGATCGTCATCTCATGAGTCGATCATCTCCCGAAAATGCATGCATTGTCAGGTCACGAAGACCCCGCAATGGAGGGAGGGACCTATGGGCCCAAAAACGCTATGCAATGCATGTGGGGTTCGGTACCGGTCCGGCCGCCTGTATCCTGAATACCGGCCGGCCGCGAGTCCAACTTTCGTAGCATCATTGCACTCCAACTGTCACAAAAAGGTCTTAGAGTTGAGAAACAGAGCTATCAGTGAAGCTGATGAGAGAGGTCCAATATTGCCTTTGTCATCAAAACCTCCAAGAAATTCGCTAGGATAA 960 0.4562 MGINNMKDSWFFDKNFNGLSDEIFDDVIKFFDFPLEDVEANAMEEDWDAQFKCLEEPYFDAFSISPSGLCDKTRKGNPKLERISTTRAEISPIEVPETTKLAYIKSVPNPKVSSNGKDIFQFQIYSPVSVFESSSSSSGENASDQPVIRKRARSKRRPLSILSPLFSVPFISSSRAFQKPRRAAAAESDFETFLSWKPSHGPKEKQRKKDVSGLTNMKRSSSHESIISRKCMHCQVTKTPQWREGPMGPKTLCNACGVRYRSGRLYPEYRPAASPTFVASLHSNCHKKVLELRNRAISEADERGPILPLSSKPPRNSLG 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0423 319 ProSitePatterns GATA-type zinc finger domain. 231 256 IPR000679 GO:0006355|GO:0043565
Prci6g0423 319 PANTHER GATA TRANSCRIPTION FACTOR 44 304 - -
Prci6g0423 319 Gene3D - 225 275 IPR013088 GO:0006355|GO:0008270
Prci6g0423 319 FunFam GATA transcription factor 220 304 - -
Prci6g0423 319 CDD ZnF_GATA 230 277 IPR000679 GO:0006355|GO:0043565
Prci6g0423 319 MobiDBLite consensus disorder prediction 198 214 - -
Prci6g0423 319 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 227 286 - -
Prci6g0423 319 ProSiteProfiles GATA-type zinc finger domain profile. 225 261 IPR000679 GO:0006355|GO:0043565
Prci6g0423 319 Pfam GATA zinc finger 231 264 IPR000679 GO:0006355|GO:0043565
Prci6g0423 319 SMART GATA_3 225 275 IPR000679 GO:0006355|GO:0043565
Prci6g0423 319 MobiDBLite consensus disorder prediction 132 154 - -
Prci6g0423 319 MobiDBLite consensus disorder prediction 196 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0423 Prci-Chr6 2758022 2761777 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0423 13 301 C2C2-Gata Transcription Factor Family AT1G08010 38.538 4.34e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Prci6g0423 GATA 5.1e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0423 - - pcin:129312873 630.172