Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0421 ATGCCCAATTTTACCAACTTCAAACAACAGCAAAAATCATTTCTTTTACATTTAATCCTCACTCTTGCGACCAGTGTGTTTTCTGTTTCCTGTGAGAACCGTGACCGCCTCCGCAAACTTGGCAATGCGCTTCTCCATGCCCTTTTAGTAGCTGAAGGTTCCGTTTCAGAGGGTATCAACAACATGAAGGATTCTTGGTTTTTTGACAAGAATTTTAATGGTTTGTCGGATGAAATTTTTGATGATGTCATCAAATTTTTTGATTTCCCGCTGGAAGATGTGGAAGCTAATGCCATGGAAGAAGATTGGGATGCCCAATTCAAATGCCTTGAAGAGCCATATTTTGATGCTTTCTCCATCTCGCCTTCTGGGCTTTGTGATAAAACTCGAAAAGGCAATCCTAAACTTGAGAGGATCTCTACTACTCGTGCTGAGATTTCCCCAATAGAAGTGCCAGAGACGACGAAACTGGCATATATCAAAAGCGTTCCCAATCCAAAAGTCTCTTCCAACGGCAAAGATATCTTCCAATTCCAGATCTACAGTCCAGTCTCTGTTTTTGAAAGCAGCAGTTCTTCATCAGGCGAGAATGCCTCCGATCAGCCTGTCATCCGAAAGCGAGCTCGCAGCAAACGACGACCTCTCTCAATCCTCAGTCCTCTATTCTCAGTTCCTTTCATCTCTTCTTCACGAGCATTCCAAAAACCTCGGAGGGCAGCTGCTGCTGAGTCGGATTTTGAAACATTCCTCAGTTGGAAACCATCTCACGGTCCGAAAGAGAAGCAGAGGAAAAAGGATGTCTCTGGTCTTACTAATATGAAGAGATCGTCATCTCATGAGTCGATCATCTCCCGAAAATGCATGCATTGTCAGGTCACGAAGACCCCGCAATGGAGGGAGGGACCTATGGGCCCAAAAACGCTATGCAATGCATGTGGGGTTCGGTACCGGTCCGGCCGCCTGTATCCTGAATACCGGCCGGCCGCGAGTCCAACTTTCGTAGCATCATTGCACTCCAACTGTCACAAAAAGGTCTTAGAGTTGAGAAACAGAGCTATCAGTGAAGCTGATGAGAGAGGTCCAATATTGCCTTTGTCATCAAAACCTCCAAGAAATTCGCTAGGATAA 1128 0.4539 MPNFTNFKQQQKSFLLHLILTLATSVFSVSCENRDRLRKLGNALLHALLVAEGSVSEGINNMKDSWFFDKNFNGLSDEIFDDVIKFFDFPLEDVEANAMEEDWDAQFKCLEEPYFDAFSISPSGLCDKTRKGNPKLERISTTRAEISPIEVPETTKLAYIKSVPNPKVSSNGKDIFQFQIYSPVSVFESSSSSSGENASDQPVIRKRARSKRRPLSILSPLFSVPFISSSRAFQKPRRAAAAESDFETFLSWKPSHGPKEKQRKKDVSGLTNMKRSSSHESIISRKCMHCQVTKTPQWREGPMGPKTLCNACGVRYRSGRLYPEYRPAASPTFVASLHSNCHKKVLELRNRAISEADERGPILPLSSKPPRNSLG 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0421 375 Gene3D - 281 331 IPR013088 GO:0006355|GO:0008270
Prci6g0421 375 ProSitePatterns GATA-type zinc finger domain. 287 312 IPR000679 GO:0006355|GO:0043565
Prci6g0421 375 ProSiteProfiles GATA-type zinc finger domain profile. 281 317 IPR000679 GO:0006355|GO:0043565
Prci6g0421 375 MobiDBLite consensus disorder prediction 254 270 - -
Prci6g0421 375 PANTHER GATA TRANSCRIPTION FACTOR 100 359 - -
Prci6g0421 375 Pfam GATA zinc finger 287 320 IPR000679 GO:0006355|GO:0043565
Prci6g0421 375 SMART GATA_3 281 331 IPR000679 GO:0006355|GO:0043565
Prci6g0421 375 CDD ZnF_GATA 286 333 IPR000679 GO:0006355|GO:0043565
Prci6g0421 375 MobiDBLite consensus disorder prediction 252 275 - -
Prci6g0421 375 MobiDBLite consensus disorder prediction 188 210 - -
Prci6g0421 375 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 283 342 - -
Prci6g0421 375 FunFam GATA transcription factor 276 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0421 Prci-Chr6 2758022 2761885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0421 69 357 C2C2-Gata Transcription Factor Family AT1G08010 38.538 1.34e-51 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Prci6g0421 GATA 6.4e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0421 - - pcin:129312873 738.799