Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0420 ATGAAGGAAGAAGCTGAGAAAAGCTTGGATCCACAACTATGGCACGCCTGCGCCGGAGGTATGGTTCAGATGCCATCGCTGAACTCTAAAGTCTTCTACTTTCCTCAAGGACACGCCGAGCACGCTCAGGCCGGCGTCGATTTTGCGGCCTCCTTGAGGATTCCACCGCTCATTCTCTGCCGCGTGGCAGCCGTTAAATTCCTCGCAGACCCAGAAACCGACGAGGTCTTTGCCAAGATCAAGTTGATTCCTTTGAGAAACTCTGAGCTGGACGACGGCGACGGGGACGAAAATACTCACGGTTCTGAAAATTCAGAGAAGCCCGCGTCTTTCGCCAAGACCTTAACCCAGTCCGATGCTAACAATGGTGGAGGCTTCTCTGTTCCGAGATACTGCGCAGAGACCATATTCCCGCGGCTTGATTACTCAGCGGAGCCCCCGGTTCAAACCGTGATTGCGAAGGACGTCCACGGTGAAATTTGGAAGTTCAGGCATATATACAGAGGCACACCTCGTCGTCACTTGTTAACAACAGGGTGGAGTACTTTCGTCAACCAGAAGAAACTCGTGGCAGGGGACTCCGTCGTGTTCCTGAGGGCCGAAAATGGCGATCTCTGCGTGGGGATTCGCCGTGCAAAGCGTGGGATCGGCGTTGGATCCGAGGGCATCTCCGGCTGGAGCTCCGCTTCTGGGAACTGTGTGGGGCCTTACGGGGCTCTCAGTGTATTGTTAAGAGAGGAGAACAAGCTTCTGCGAAACAACTCGAATGGTGGGAATTCAAATCCTGGGAGAGGAAGAGCGAGGCCAGAATCTGTGATGGAAGCTGTGACACTTGCTGCGAATTGTCAGGCATTCGAGGTTGTTTATTACCCACGAGCAAGTACTCCTGAGTTCTGTGTCAAGGCTGGGGCAGTTAAGGCAGCCATGAGAATTCAATGGTGCTCTGGGATGAGGTTCAAGATGGCCTTTGAGACTGAGGATTCTTCCAGGATTAGCTGGTTCATGGGCACTGTTGCTTCTGTTCAAGTCGTTGATCCTATTCGCTGGCCCAATTCTCCTTGGAGACTTCTTCAGGTTACTTGGGATGAGCCGGATTTGTTACAGAATGTGAAGAGGGTTAGCCCATGGTTGGTTGAACTTGTATCGAACAGGCCGGTCATCCCTCTTATGCCGTTCTCCCCCCCTCGGAAGAAGATGCGGCTTCCTCAACACCCAGACTTCCCCTTTGATGGTCACTTTACGATACCGACCTTTCCCGGCGGCAACCCCCTTGGGCCCAGTAGCCCCTTGTGTTGTCTTTCCGATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTCGGACTCTCTATTTCAGATCTCCACCTAAACAGTAAATTGCAGTTGGGTCTGCTCTCAAATAACATCCAGCAGCTTGATGTGCATCCCGGGATTTCCAGTGGCAATATAATGATGGGCCATGACAAGAAAAATGACAGCTTGTCATGCTTGCTTACCATGGGAAACTCCAACAAGAGTTTAGAGAAATCTGATAAGGTGAAGAGACACCAGTTTCTGCTTTTTGGACAGCCAATACTGACTGAACAACAAATATCTCAAAGCTGTCATGCTGAAGTGTGGTCTCAGAAATTTTCGAGTAAAAATTTGCCAGATGAATGTAAGGATAAAGCAAAGAGCTTCTTGGGTGAATCCCAACCAGCGGTTTCACAGCCAGGATTATCTTCGACGACCGACTTTTCTTGGCAACTTGGGTTGGAAACTGGTCATTGCAAGGTATTCTTGGAGTCAGAAGATGTGGGACGCACTCTAGACCTTTCGTGTCTCGGCTCCTATGAAGAGCTGTACGGCAAGCTGGCCGACATGTTCGGACTCGAAAGATCTGATATGTTGAGCCGTGTGCTCTACCGAGATGCTTCCGGTGCTGTCAAACGAGCTGGAGAAGAACCCTTCAGTGACTTCATGAAAACAGCAAAAAGATTAACAATTCTGACAGATTCGGGCAGCAAAGATATTAAGAGGGCGTGGATGACAGGATCTCGAAATGGAGAGCATGGATTGGATGCATCAAACAAGACAGGTTTTCTGAGCATATTTGCCTAG 2106 0.5014 MKEEAEKSLDPQLWHACAGGMVQMPSLNSKVFYFPQGHAEHAQAGVDFAASLRIPPLILCRVAAVKFLADPETDEVFAKIKLIPLRNSELDDGDGDENTHGSENSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSVVFLRAENGDLCVGIRRAKRGIGVGSEGISGWSSASGNCVGPYGALSVLLREENKLLRNNSNGGNSNPGRGRARPESVMEAVTLAANCQAFEVVYYPRASTPEFCVKAGAVKAAMRIQWCSGMRFKMAFETEDSSRISWFMGTVASVQVVDPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNRPVIPLMPFSPPRKKMRLPQHPDFPFDGHFTIPTFPGGNPLGPSSPLCCLSDNAPAGIQGARHAQFGLSISDLHLNSKLQLGLLSNNIQQLDVHPGISSGNIMMGHDKKNDSLSCLLTMGNSNKSLEKSDKVKRHQFLLFGQPILTEQQISQSCHAEVWSQKFSSKNLPDECKDKAKSFLGESQPAVSQPGLSSTTDFSWQLGLETGHCKVFLESEDVGRTLDLSCLGSYEELYGKLADMFGLERSDMLSRVLYRDASGAVKRAGEEPFSDFMKTAKRLTILTDSGSKDIKRAWMTGSRNGEHGLDASNKTGFLSIFA 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0420 701 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 7 669 IPR044835 GO:0003677|GO:0006355|GO:0009725
Prci6g0420 701 ProSiteProfiles PB1 domain profile. 589 669 IPR000270 GO:0005515
Prci6g0420 701 Pfam Auxin response factor 275 358 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Prci6g0420 701 MobiDBLite consensus disorder prediction 88 103 - -
Prci6g0420 701 Gene3D - 109 213 IPR015300 -
Prci6g0420 701 Gene3D - 313 385 - -
Prci6g0420 701 ProSiteProfiles B3 DNA-binding domain profile. 111 213 IPR003340 GO:0003677
Prci6g0420 701 Pfam B3 DNA binding domain 111 212 IPR003340 GO:0003677
Prci6g0420 701 FunFam Auxin response factor 313 386 - -
Prci6g0420 701 MobiDBLite consensus disorder prediction 88 109 - -
Prci6g0420 701 SMART B3_2 111 213 IPR003340 GO:0003677
Prci6g0420 701 CDD B3_DNA 110 211 IPR003340 GO:0003677
Prci6g0420 701 FunFam Auxin response factor 109 213 - -
Prci6g0420 701 SUPERFAMILY DNA-binding pseudobarrel domain 104 214 IPR015300 -
Prci6g0420 701 Gene3D - 588 674 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0420 Prci-Chr6 2733537 2737432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0420 1 673 B3 DNA Binding Superfamily AT4G30080 61.039 0.0 783
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Prci6g0420 B3 1.7e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0420 - - qsa:O6P43_028379 1086.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci7g2522 7 37704520 37709016 Prci6g0420 6 2733537 2737432 CCT