Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0417 ATGGCGATGGCTGTGGCTCCCCTCAGAGAAAGCAGCAGCGGGATCATCAGCATGCACCTTGACTCCGGCAAGTATGTCCGTTACACGGCGGAGCAGGTCGAAGCGCTCGAACGCGTTTACGCTGACTGCCCGAAGCCCAGCTCCTTGCGAAGGCAGCAACTGATCCGAGAGTGCCCCATTCTTGCGAACATCGAACCCAAGCAGATCAAAGTTTGGTTCCAAAATCGCAGGTGTAGAGAGAAGCAGAGGAAGGAGTCTGGGCGGCTTCAGACTGTGAACAGAAAACTGACTGCGATGAACAAATTGTTGATGGAGGAAAATGAGCGGTTGCAAAAGCAGGTTTCCCAACTGGTATGCGAAAATGGGTTTATGAGGCAGCAACTGCATAGTGCGTCAGCAGCAACTACTGATGCAAGTTGCGATTCGGTTGTCAACACACCTCAGCACTCCTTAAGAGATGCCAATAACCCTGCTGGACTCGTGTCAATTGCGGAGGAGACCTTGACAGAGTTCCTTTCAAAGGCTAGGGGAACTGCTGTTGATTGGGTGCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATCTTTGCCATTTCGCGAAGTTGCAGTGGAGTGGCAGCTCGATCATGCGGTCTTGTTAGTTTAGAACCTACAAAGATTGCGGAGATCCTAAAAGATCGTCCATCTTGGTTTCGGGATTGCCGGAGTCTAGAAGTTTTTACAATGTTCCCTGCGGGGAATGGTGGAACAATTGAACTTGTGTACACACAGACATATGCTCCAACTACTTTGGCTCCTGCCCGGGATTTCTGGACTCTGAGATACACTACAAGTTTGGACAATGGAAGTCTTGTGGTTTGTGAGAGATCACTGTCTGGTTCGGGTGCTGGCGCTAATGCAGCTGCTGCTGCTCAGTTTGTTAGAGCTGAAATGCTCCCTAGTGGCTACCTGATTCGACCCTGTGAAGGTGGAGGATCAATCATCCATATTGTAGACCACTTAAATCTCGAGGCATGGAGTGTGCCAGAGGTGCTGAGACCACTTTATCAATCATCAAAAGTTGTTGCTCAGAAAATGACAATTGCAGCACTTCGCTATGTCAGGCAAATAGCTCAGGAAACAAGCGGCGAAGTGGTTTATGGTTTAGGTAGGCAGCCTGCTGTTCTGCGAACTTTCAGCCAAAGGCTGAACAGAGGCTTTAATGATGCTGTTAATGGATTTAATGATGATGGCTGGTCTATAATGAACCATGATGGTGCTGATGACGTGATTATTGCAGTCAACTCAGCCAAGAATCTGAGTGCCACCACTAATCCTGCAAGTTCCCTAACATTCCTTGGAGGAGTTCTCTGCGCAAGAGCTTCTATGTTGCTCCAGAACGTCCCTCCAGCAGTTTTAGTTCGGTTTCTGAGGGAGCACCGTGCTGAGTGGGCTGATTTTAATGTTGATGCCTATTGTGCTGCATCACTTAAAGCAGGCTCCTTTGCCTATCCTGTCATGAGGTCAACTAGATTCACGGGAAGTCAAATTATCATGCCTCTTGGCCATACAATCGAGCATGAAGAGATGATTGAAATTGTTCGTCTTGAAGGCCAATCTCTCTCTCAAGAAGATGCATTTGCTTCTAGGGACATTCATCTCTTACAGATATGTAGTGGGATTGATGAAAATGCTGTTGGGGCCTGTTCTGAGCTTATATTTGCTTCAATTGATGAAATGTTCCCTGATGATGCTCCATTGTTGCCCTCGGGTTTCCGGATCATCCCATTGGATTCAAAATCAGGTGATAAGAAGGATTCAGTATCTGGAAATCAGACCCTGGAATTGACATCTGGTTTTGAAGTGGATCCAGCGACAAATCATGCTGTGGGAGATGCATCATCATGCCAAAGTACTCGGTCGGTGTTGACTATTGCCTTCCAGTTTCCTTTTGAGAGCAGCTTGCAGGAAAACATTGCAATCATGGCAAGACAGTATGTACGCGGTGTGATTTCATCTGTGCAGAGGGTTGCCATGGCTATCTCTCCATCTGGTATAAGCCCACCAGTGGGGCCAAAACTCAGTCCTGGCTCTCCTGAAGCAGTTACTCTAGCTCACTGGATATGCCAGAGTTATAGTTTCTATCTGGGAGCAGAATTATTGAGATCGGATGCTCTTGGTGGTGATTCGTTGCTGACATTATGGCATCATCAGGATGCCATTTTTTGTTGTTCGGTGAGGTCCTTGCCTGTGTTCATCTTTGCAAATCAGGCAGGGCTTGACATGCTGGAGACAACTCTAGTAGCTTTGCAAGATATCACATTGGATAAAATATTTGACGACTCTGGACGCAGGGCATTGTGTACAGAATTTGCCAAGTTGATGCAGGAGGGGTTCGCTCATCTGCCTGCAGGAATGTGCTTGTCCATGATGGGACGGCATGTTTCATTTGAACAAGCCCTCGCATGGAATGTTCTTACTGAAGATAACAGTGTTCATTGCTTAGCTTTCTCTTTCATCAATTGGTCGTTTGTATGA 2523 0.4736 MAMAVAPLRESSSGIISMHLDSGKYVRYTAEQVEALERVYADCPKPSSLRRQQLIRECPILANIEPKQIKVWFQNRRCREKQRKESGRLQTVNRKLTAMNKLLMEENERLQKQVSQLVCENGFMRQQLHSASAATTDASCDSVVNTPQHSLRDANNPAGLVSIAEETLTEFLSKARGTAVDWVQMPGMKPGPDSVGIFAISRSCSGVAARSCGLVSLEPTKIAEILKDRPSWFRDCRSLEVFTMFPAGNGGTIELVYTQTYAPTTLAPARDFWTLRYTTSLDNGSLVVCERSLSGSGAGANAAAAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEAWSVPEVLRPLYQSSKVVAQKMTIAALRYVRQIAQETSGEVVYGLGRQPAVLRTFSQRLNRGFNDAVNGFNDDGWSIMNHDGADDVIIAVNSAKNLSATTNPASSLTFLGGVLCARASMLLQNVPPAVLVRFLREHRAEWADFNVDAYCAASLKAGSFAYPVMRSTRFTGSQIIMPLGHTIEHEEMIEIVRLEGQSLSQEDAFASRDIHLLQICSGIDENAVGACSELIFASIDEMFPDDAPLLPSGFRIIPLDSKSGDKKDSVSGNQTLELTSGFEVDPATNHAVGDASSCQSTRSVLTIAFQFPFESSLQENIAIMARQYVRGVISSVQRVAMAISPSGISPPVGPKLSPGSPEAVTLAHWICQSYSFYLGAELLRSDALGGDSLLKXLWHHQDAIFCCSVRSLPVFIFANQAGLDMLETTLVALQDITLDKIFDDSGRRALCTEFAKLMQEGFAHLPAGMCLSMMGRHVSFEQALAWNVLTEDNSVHCLAFSFINWSFV 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0417 841 Gene3D - 199 378 IPR023393 -
Prci6g0417 841 SUPERFAMILY Homeodomain-like 22 85 IPR009057 -
Prci6g0417 841 CDD bZIP 76 115 - -
Prci6g0417 841 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 20 841 IPR044830 GO:0003700
Prci6g0417 841 Pfam MEKHLA domain 698 840 IPR013978 -
Prci6g0417 841 Pfam START domain 163 371 IPR002913 GO:0008289
Prci6g0417 841 ProSiteProfiles 'Homeobox' domain profile. 19 83 IPR001356 GO:0003677
Prci6g0417 841 SMART START_1 162 372 IPR002913 GO:0008289
Prci6g0417 841 Coils Coil 89 120 - -
Prci6g0417 841 SUPERFAMILY Bet v1-like 162 374 - -
Prci6g0417 841 FunFam Homeobox-leucine zipper protein REVOLUTA 24 79 - -
Prci6g0417 841 Gene3D - 17 89 - -
Prci6g0417 841 SMART HOX_1 21 87 IPR001356 GO:0003677
Prci6g0417 841 ProSiteProfiles START domain profile. 153 381 IPR002913 GO:0008289
Prci6g0417 841 CDD homeodomain 24 84 IPR001356 GO:0003677
Prci6g0417 841 Pfam Homeodomain 24 82 IPR001356 GO:0003677
Prci6g0417 841 CDD START_ArGLABRA2_like 157 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0417 Prci-Chr6 2688545 2696617 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0417 1 841 Homeobox Transcription Factor Family AT5G60690 79.599 0.0 1401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Prci6g0417 START 3.6e-46 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0417 K09338 - qsa:O6P43_000330 1458.35