Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0402 ATGAGTACAGAGCAAAAGCCCCTCAGTGAAGAACAAGATGCGGTTTCGTGCCAAATAACAGCTTCTCTCCCAGTTCACAAGGTTGATAATACAATGGGGATAAGTGGAGAGTCCACGCATACTCGTCGCTGGAAGCGAGAGAATCTTTCACTACAAATACCATCAAGAACATCAGAAGAGTCTTCTCAAGATTTTGTAACAATCAAGATGCCTCAGACTCCAAGTCCTTCTCCAACTCCTAAGAGAGTGAATTTTCTGGTGACTTCACGCTCTGTTGACACCTCCAGTAATAAGTCTCCAGGACCTTCAGCATCAAGAGGAAAACCATCCATAAAAAGTCTCTTACCAAAACTGAGCTTTATTTCTCGGGTGTCATCAGATATTGAAAAGGGTTCTACTGCAGCTTCAGAAGGTTCCTCTTCAGGCACTCGAGAAAAGCCTTCAATTTCAAGAACCTTATCCCTTACTAAAATATTTACTCCCAGGATTAAGAGGACCTCATCATTGCCAGTGGATGAATTTGCACATTCAAATTCAGAATCTGCTCATGCTGGAACTCTTGGCACTTCTTTGCAGAGAAGCTCTGCTCAGAGGCAAATAGTTCGCTCTCTTTCAGTGCCTGTCAACAATAACGAAAAAGGCTTAAGGAGAATGGATTCATTTTTCCGTGTAATTCCTTCCACCCCACGAGTGAAGGATGGAATTGAATTTTCGACAGCATCCCCAGCAAAGGATTCTGAAAACGATATTGCTGATGGTGAGGATATAGCAGAAGAAGAGGCCGTATGCAGAATTTGTATGGTTGATCTATGCGAAGGGGGTGAAACTTTCAAGCTGGAATGCAGCTGCAAAGGCGAACTTGCTCTGGCACACCAAGAATGTGCTATCAAGTGGTTTAGCATCAAAGGAAACAAAACATGTGACGTGTGCAAGGAGGAGGTTCGGAACCTACCTGTTACTCTTCTGCGGATCCAAAGTGTCAGGGCTCGACATACTGGAGCAAGTAGGTCTCAGCTGGACAATGTGAATGAATATAGGGTTTGGCAGGAAGTGCCCGTTCTAGTCATTGTCAGCATGCTTGCATATTTCTGTTTTCTTGAGCAGCTATTGGTTGGAAAAATGGGTACTTCTGCAATTGCTATATCTCTTCCGTTTTCATGTGTATTGGGTCTACTCTCATCCATGACATCATCCACAATGGTGAAGAGCAGGTTCGTCTGGATTTATGCATCAGCACAGTTTGCCCTGGTGGTTGTCTTTGCTCATATATTTTACTCCTTGGTAATTGCAAAAGATGTCCGCGTGCAGGCAATCCTGTCAATACTTCTAGCAACCTTCGCAGGGTTTGGTGTGGTAATGAGTGGAAGTTCAATTATTGTTGAGTTCTTCAGATGGAGAAGAAGATGGCAGGCTTCATTAGAGCAGAATAATAATGGTCTTCCAGTTATGGCACCTCATTCTGGCTCTTCCAGAGGAAGGGCTCAGAGTCAATAA 1494 0.4378 MSTEQKPLSEEQDAVSCQITASLPVHKVDNTMGISGESTHTRRWKRENLSLQIPSRTSEESSQDFVTIKMPQTPSPSPTPKRVNFLVTSRSVDTSSNKSPGPSASRGKPSIKSLLPKLSFISRVSSDIEKGSTAASEGSSSGTREKPSISRTLSLTKIFTPRIKRTSSLPVDEFAHSNSESAHAGTLGTSLQRSSAQRQIVRSLSVPVNNNEKGLRRMDSFFRVIPSTPRVKDGIEFSTASPAKDSENDIADGEDIAEEEAVCRICMVDLCEGGETFKLECSCKGELALAHQECAIKWFSIKGNKTCDVCKEEVRNLPVTLLRIQSVRARHTGASRSQLDNVNEYRVWQEVPVLVIVSMLAYFCFLEQLLVGKMGTSAIAISLPFSCVLGLLSSMTSSTMVKSRFVWIYASAQFALVVVFAHIFYSLVIAKDVRVQAILSILLATFAGFGVVMSGSSIIVEFFRWRRRWQASLEQNNNGLPVMAPHSGSSRGRAQSQ 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0402 497 ProSiteProfiles Zinc finger RING-CH-type profile. 255 317 IPR011016 GO:0008270
Prci6g0402 497 CDD RING_CH-C4HC3_MARCH 263 311 - -
Prci6g0402 497 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 249 318 IPR013083 -
Prci6g0402 497 SMART ringv_2 262 311 IPR011016 GO:0008270
Prci6g0402 497 MobiDBLite consensus disorder prediction 50 72 - -
Prci6g0402 497 Pfam RING-variant domain 263 310 IPR011016 GO:0008270
Prci6g0402 497 PANTHER OS02G0165000 PROTEIN 23 476 - -
Prci6g0402 497 MobiDBLite consensus disorder prediction 28 111 - -
Prci6g0402 497 SUPERFAMILY RING/U-box 259 314 - -
Prci6g0402 497 MobiDBLite consensus disorder prediction 127 153 - -
Prci6g0402 497 MobiDBLite consensus disorder prediction 79 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0402 Prci-Chr6 2585710 2590728 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0402 249 317 C3H Transcription Factor Family AT2G37950 45.714 7.91e-14 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0402 - - gmx:100815566 665.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci7g2539 7 37792968 37799265 Prci6g0402 6 2585710 2590728 CCT