Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0401 ATGAGTACAGAGCAAAAGCCCCTCAGTGAAGAACAAGATGCGGTTTCGTGCCAAATAACAGCTTCTCTCCCAGTTCACAAGGTTGATAATACAATGGGGATAAGTGGAGAGTCCACGCATACTCGTCGCTGGAAGCGAGAGAATCTTTCACTACAAATACCATCAAGAACATCAGAAGAGTCTTCTCAAGATTTTGTAACAATCAAGATGCCTCAGACTCCAAGTCCTTCTCCAACTCCTAAGAGAGTGAATTTTCTGGTGACTTCACGCTCTGTTGACACCTCCAGTAATAAGTCTCCAGGACCTTCAGCATCAAGAGGAAAACCATCCATAAAAAGTCTCTTACCAAAACTGAGCTTTATTTCTCGGGTGTCATCAGATATTGAAAAGGGTTCTACTGCAGCTTCAGAAGGTTCCTCTTCAGGCACTCGAGAAAAGCCTTCAATTTCAAGAACCTTATCCCTTACTAAAATATTTACTCCCAGGATTAAGAGGACCTCATCATTGCCAGTGGATGAATTTGCACATTCAAATTCAGAATCTGCTCATGCTGGAACTCTTGGCACTTCTTTGCAGAGAAGCTCTGCTCAGAGGCAAATAGTTCGCTCTCTTTCAGTGCCTGTCAACAATAACGAAAAAGGCTTAAGGAGAATGGATTCATTTTTCCGTGTAATTCCTTCCACCCCACGAGTGAAGGATGGAATTGAATTTTCGACAGCATCCCCAGCAAAGGATTCTGAAAACGATATTGCTGATGGTGAGGATATAGCAGAAGAAGAGGCCGTATGCAGAATTTGTATGGTTGATCTATGCGAAGGGGGTGAAACTTTCAAGCTGGAATGCAGCTGCAAAGGCGAACTTGCTCTGGCACACCAAGAATGTGCTATCAAGTGGTTTAGCATCAAAGGAAACAAAACATGTGACGTGTGCAAGGAGGAGGTTCGGAACCTACCTGTTACTCTTCTGCGGATCCAAAGTGTCAGGGCTCGACATACTGGAGCAAGTAGGTCTCAGCTGGACAATGTGAATGAATATAGGGTTTGGCAGGAAGTGCCCGTTCTAGTCATTGTCAGCATGCTTGCATATTTCTGTTTTCTTGAGCAGCTATTGGTTGGAAAAATGGGTACTTCTGCAATTGCTATATCTCTTCCGTTTTCATGTGTATTGGGTCTACTCTCATCCATGACATCATCCACAATGGTGAAGAGCAGGTTCGTCTGGATTTATGCATCAGCACAGTTTGCCCTGGTGGTTGTCTTTGCTCATATATTTTACTCCTTGGTCCGCGTGCAGGCAATCCTGTCAATACTTCTAGCAACCTTCGCAGGGTTTGGTGTGGTAATGAGTGGAAGTTCAATTATTGTTGAGTTCTTCAGATGGAGAAGAAGATGGCAGGCTTCATTAGAGCAGAATAATAATGGTCTTCCAGTTATGGCACCTCATTCTGGCTCTTCCAGAGGAAGGGCTCAGAGTCAATAA 1479 0.4395 MSTEQKPLSEEQDAVSCQITASLPVHKVDNTMGISGESTHTRRWKRENLSLQIPSRTSEESSQDFVTIKMPQTPSPSPTPKRVNFLVTSRSVDTSSNKSPGPSASRGKPSIKSLLPKLSFISRVSSDIEKGSTAASEGSSSGTREKPSISRTLSLTKIFTPRIKRTSSLPVDEFAHSNSESAHAGTLGTSLQRSSAQRQIVRSLSVPVNNNEKGLRRMDSFFRVIPSTPRVKDGIEFSTASPAKDSENDIADGEDIAEEEAVCRICMVDLCEGGETFKLECSCKGELALAHQECAIKWFSIKGNKTCDVCKEEVRNLPVTLLRIQSVRARHTGASRSQLDNVNEYRVWQEVPVLVIVSMLAYFCFLEQLLVGKMGTSAIAISLPFSCVLGLLSSMTSSTMVKSRFVWIYASAQFALVVVFAHIFYSLVRVQAILSILLATFAGFGVVMSGSSIIVEFFRWRRRWQASLEQNNNGLPVMAPHSGSSRGRAQSQ 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0401 492 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 249 318 IPR013083 -
Prci6g0401 492 ProSiteProfiles Zinc finger RING-CH-type profile. 255 317 IPR011016 GO:0008270
Prci6g0401 492 Pfam RING-variant domain 263 310 IPR011016 GO:0008270
Prci6g0401 492 CDD RING_CH-C4HC3_MARCH 263 311 - -
Prci6g0401 492 SMART ringv_2 262 311 IPR011016 GO:0008270
Prci6g0401 492 MobiDBLite consensus disorder prediction 50 72 - -
Prci6g0401 492 PANTHER OS02G0165000 PROTEIN 23 471 - -
Prci6g0401 492 MobiDBLite consensus disorder prediction 28 111 - -
Prci6g0401 492 SUPERFAMILY RING/U-box 259 314 - -
Prci6g0401 492 MobiDBLite consensus disorder prediction 127 153 - -
Prci6g0401 492 MobiDBLite consensus disorder prediction 79 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0401 Prci-Chr6 2585709 2590728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0401 249 317 C3H Transcription Factor Family AT2G37950 45.714 7.65e-14 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0401 - - gmx:100815566 671.389