Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0400 ATGGCGGACACTGGAAACACCGAGACTGAACTTTCACTTTCTGGCTCTAAAACCCTAAACCCTTCTGACGCAGCCAACGGCTTTCATTTGCCCCAAGCGCCCGGTGAAAACGCTCAAATCGATCAGGAATCTTCGTCTCCTGCTGCCCAGCCTTCCGGCGATGCCGTCTCGGCCGTAAAGCGGAAACGGGATGACTCGGATTCAGGGGTCTCAGATCCTTCGCTCAATCCCTTGTGGAAAACCAGCCTCTGTTCTTATTTTCGGCGACATGATGGCTCCTGCAGCCACGGCAGTGAATGCCGCTATGCCCACGGCGAAGAGGAGCTTCGTCCTCGGCCCGATAACACCTGGGACCCGACTTCTGAGCGGGCGAAGAAGGCAATGAAATCCGATACGGGCGAGAAATGTACAGTTTCCTTGGGTGTTATGATGACTGAGGCTGTGGTCGATGATGCTGATGGCAAGGACAATGATGATTCCAATCACGCTCTTAGCAAATGCTTGGTGCATTTACCGAGGAAATGGGGTTCGGACAGCTTGAGGAGTTTTCTCAATCAAGAGGGTATACCTTTCAAATCTGCAAAGAAAAAGAAAGGCATGCTAGTAGGATTTGTCACTTTTGAAGATCAAGAACAATTGAAGGGCTCAACAAAGGAGCTTGAAGGAAAATTAATTGGCAGCAAAAGTTTAGAAGTTGCGGACGTCATTCCTCGATCATTTGACAAGAAGAGTAATTCAAATGTCACTCTTTGTGCAGAATCTGCACCAAATGCAGATGCTGCGCCAGTGAAGGAGAACACAGATGGGAATATGGATGGTGAGACAAATGGTGCGAATTTGGCAGTTGGTGATTCCATGCCGAAGACAAGAAGCCTCCGCGATGTAGTGACTCCTCTTTCTCATATGGCCTATGCTGACCAGTTAGAGCACAAAAAAGGCTCTCTCACCCAGATTCTCAAAGGACTTACTAGAAATGCTCGTAGAGCTTGTCCAAGTGGCGTCTCTCTTCCTGAGTGGGTTCTGAAGTCTAGGGACTTAGGTGGTCTTCCTTGTAAACTAGAAGGTATTATTGGATCACCAAGGGTACATGGATATCGCAACAAGTGTGAATTTTCTGTTGGATATTCTGTAGAAGGAAAAATAACAGTAGGATTCATGCTTGGAAATTTCAGGGAGGGTGTAACAGCAGTTGAGGAAGCTGTGGGCTGCCCAAATGTTTCTACAATTCTCCAATATGCTTCTATCTTTGATGAATTTCTTCAGCATTCACAGTTACCAGTTTGGAACAGGTTTAAGAATAGCGGGTTTTGGCGTCAATTGACAGTTCGAGAAGGAAGGACAAGTGGGAAGGTTGCTGATGCTGTAGATTTTGGTGGGATTGCAGAGGTCATGCTTATTGTGCAGGTTTCTACAATTGGCTTTGATAATGAGCTAGTAACTGGTGAATTTGAGAAACTTGCTCAAGCATTTGTTGCAGGAGCTAATGCACATTCTCCATCATTACCTCTCACAGCTCTGGTTGTACAGGATCACCAAGGAATATCCAACGTAGCACCAGCTGATGCCCCACTGCAGTCACTTCTCACTCCTAAAGCGGATGGTGATCAAATAAATTTTAAAAATGGTGCCATGGACGTGAGGATCCATGATTATATCAGCGATCTCCAGTTCTCTATATCTCCAACTGCATTTTTCCAGGTCAACACTCTAGCTGCTGAGAAGTTGTACTCACTTGCTGGAGATTGGGCATGCTTAGGTTCTGATACATTGCTATTTGATATTTGCTGTGGGACAGGAACAATTGGCCTGACCTTAGCACATCGTGTTGGTATGGTGATTGGTGTTGAAATGAATGCCTCTGCCATATCTGATGCCCAAAGGAATGCTGAGATTAACGGTATAAAGAATTGTAGATTCATATGTGCAAAGGCAGAGGATGTGATGGGATCTTTGTTAAAGGAGTACCTAAATAAGCCTAAGGAACAAGTCAATGTTCCAAGTATCTGTGGAACTGATATTGAAGAAATTTCTGTGGGGAGTGCAAGCCAGGAAACTGAAAATGGTGAACGAGAATCTGAGTGTTCTGAAAATGGCAAGCAAGAAGATGAAATTGAGGTTCAGAAAGTGAGTGATTCTGAAAATGGGAATTCTTTGACACAACAATTTAAAAATGTTGTTGCTATTGTTGACCCTCCACGTGCTGGACTCCACCCAACTGTGATCAAAGCTCTGAGGACTAATCAAGGACTGCGGAGGCTTGTCTACATATCCTGTAATCCTGAAAGTTTGGTGGCGAATGCTATTGAGCTTTGCACACCATCTCCTGTGAAAATTGAAAAAGGAAATAAAGACAACAGAGGATGGAGAAACAGGAGCAGTGCTGGTCTTGCAAGACATAGGGCCAAGTCTATGCCTATCTCAGAGGCCTTCCAACCCATAAAAGCCATGGCTGTTGATCTATTCCCACATACTGAACACTGTGAACTGGTGATGCTACTCGAGAGGTAG 2508 0.4518 MADTGNTETELSLSGSKTLNPSDAANGFHLPQAPGENAQIDQESSSPAAQPSGDAVSAVKRKRDDSDSGVSDPSLNPLWKTSLCSYFRRHDGSCSHGSECRYAHGEEELRPRPDNTWDPTSERAKKAMKSDTGEKCTVSLGVMMTEAVVDDADGKDNDDSNHALSKCLVHLPRKWGSDSLRSFLNQEGIPFKSAKKKKGMLVGFVTFEDQEQLKGSTKELEGKLIGSKSLEVADVIPRSFDKKSNSNVTLCAESAPNADAAPVKENTDGNMDGETNGANLAVGDSMPKTRSLRDVVTPLSHMAYADQLEHKKGSLTQILKGLTRNARRACPSGVSLPEWVLKSRDLGGLPCKLEGIIGSPRVHGYRNKCEFSVGYSVEGKITVGFMLGNFREGVTAVEEAVGCPNVSTILXQYASIFDEFLQHSQLPVWNRFKNSGFWRQLTVREGRTSGKVADAVDFGGIAEVMLIVQVSTIGFDNELVTGEFEKLAQAFVAGANAHSPSLPLTALVVQDHQGISNVAPADAPLQSLLTPKADGDQINFKNGAMDVRIHDYISDLQFSISPTAFFQVNTLAAEKLYSLAGDWACLGSDTLLFDICCGTGTIGLTLAHRVGMVIGVEMNASAISDAQRNAEINGIKNCRFICAKAEDVMGSLLKEYLNKPKEQVNVPSICGTDIEEISVGSASQETENGERESECSENGKQEDEIEVQKVSDSENGNSLTQQFKNVVAIVDPPRAGLHPTVIKALRTNQGLRRLVYISCNPESLVANAIELCTPSPVKIEKGNKDNRGWRNRSSAGLARHRAKSMPISEAFQPIKAMAVDLFPHTEHCELVMLLER 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0400 836 ProSiteProfiles Zinc finger C3H1-type profile. 78 107 IPR000571 GO:0046872
Prci6g0400 836 Pfam tRNA (Uracil-5-)-methyltransferase 723 772 IPR010280 GO:0006396|GO:0008173
Prci6g0400 836 CDD AdoMet_MTases 594 648 - -
Prci6g0400 836 MobiDBLite consensus disorder prediction 1 74 - -
Prci6g0400 836 MobiDBLite consensus disorder prediction 260 285 - -
Prci6g0400 836 MobiDBLite consensus disorder prediction 680 703 - -
Prci6g0400 836 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 298 836 IPR029063 -
Prci6g0400 836 ProSiteProfiles SAM-dependent methyltransferase RNA m(5)U-type domain profile. 295 836 IPR010280 GO:0006396|GO:0008173
Prci6g0400 836 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE 96 836 IPR045850 -
Prci6g0400 836 Pfam Methyltransferase domain 589 651 IPR025714 -
Prci6g0400 836 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 79 106 IPR000571 GO:0046872
Prci6g0400 836 MobiDBLite consensus disorder prediction 37 52 - -
Prci6g0400 836 Gene3D Vaccinia Virus protein VP39 535 835 IPR029063 -
Prci6g0400 836 Gene3D - 72 112 - -
Prci6g0400 836 SUPERFAMILY CCCH zinc finger 77 111 IPR036855 GO:0046872
Prci6g0400 836 ProSitePatterns RNA methyltransferase trmA family signature 1. 731 763 IPR030390 -
Prci6g0400 836 MobiDBLite consensus disorder prediction 687 703 - -
Prci6g0400 836 Coils Coil 305 325 - -
Prci6g0400 836 SMART c3hfinal6 78 106 IPR000571 GO:0046872
Prci6g0400 836 MobiDBLite consensus disorder prediction 1 25 - -
Prci6g0400 836 SUPERFAMILY RNA-binding domain, RBD 170 242 IPR035979 GO:0003676
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Prci6g0400 tRNA_U5-meth_tr 2.6e-07 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0400 K15332 - qsa:O6P43_028361 1162.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci6g0400 6 2575754 2583070 Prci6g0400 6 2575754 2583070 ECH