Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0387 ATGTCTGAACAAGGCCTTACTCTTCCTTCCACCCTTAAAACCTTCCTACCCCATTCAAATCCTCTCAAGAAGAAGAGAAATCTCCCCGGAACACCAGATCCGGATGCACAGGTGATAGCGCTGTCGCCCAAGTCCTTGATGGCCACGAACCGTTTTGTGTGCGAAATCTGCAAGAAGGGGTTCCAGAGAGACCAGAATCTGCAGCTGCACCGCCGAGGACACAACCTTCCCTGGAAGCTCCGGCAGAGAAGCGAGAAAGAACCGGGGAAAAAAGTGTACGTGTGCCCTGAAAAGACGTGCGTCCACCACGATCCTTCCAGAGCCCTGGGAGACCTCACGGGCATAAAGAAGCACTACAGCAGAAAACACGGCGAGAAGAAGTGGAACTGCGACAAGTGTTCCAAGAAATACGCCGTTCACTCCGACTGGAAGGCACATGTCAAGATTTGTGGGACTAGAGAGTACCGATGTCACTGCGGCACTCTTTTCTCCAGGAAAGACAGCTTCTTGACGCATAGAGCTTTCTGTGATGTCTTGGTGGAAGAAAGTGCACGAACAAGCTTTGTTCCTCAAGCACCTGCTAGAATCCCTCAGATTTTTACTGGGTATTATCCAGGGTATGGAGTTTCGACAGAAACATTGGGGAGTTTGATCCACCAGGTCAATTCCAGCGTGCCTGATTTGATGCAAACCATGAACATGTTTGCGACTTCGTCGCCGTCCTCGTGGGTGAAACCATACCCGCCAGAAGCATCATTCGAAAGAATTGCCAGTCTGGCCATTTCTGGGGCGCCTCGCCTGCTGAAGGAGGAGGAAGAAGAAGAAGAGAACAAAGGAGGCTTGTCGTATAGTGTGAGCTCCTTGTATTGTAGCAATTATCAAAGCCCATCGTCGCAAGCAGGCTTGGCTCAGCCTCATTACATGTCACCACCCACTTCACTGTTACAAAAAGTAAACCAGATGGGATCTACAGGCAGCAACCATATCAACATTTTTGGGTTCACGGGTGGCTCCTTGCCTCTCTCCTACAGCACGTCGTCGTTTAGAACTGTCGATCAGGTGGGACTGTATTTCAAGAACACAGCAAATCCAACTGATCAAAACTTGAACGACTTGGTGGATTCACAAGCGGTGGTAAGCACCAGTGTTGGAGTTGGAGGTGATGATGGTCGTGGAATGGTATTGAATGATTCGAAGACGAGCCACTTTATGAGAAGCGGAGAGAATGTGAATGAAATGGAATTGGGTGGTTTAACTAGAGATTTTCTAGGCGTTGGTGAAAAGGAGTTAGCCGAGTTTAATGCAATGGGCTCGGCCGCTCAGCCATGGAGCTGA 1335 0.4951 MSEQGLTLPSTLKTFLPHSNPLKKKRNLPGTPDPDAQVIALSPKSLMATNRFVCEICKKGFQRDQNLQLHRRGHNLPWKLRQRSEKEPGKKVYVCPEKTCVHHDPSRALGDLTGIKKHYSRKHGEKKWNCDKCSKKYAVHSDWKAHVKICGTREYRCHCGTLFSRKDSFLTHRAFCDVLVEESARTSFVPQAPARIPQIFTGYYPGYGVSTETLGSLIHQVNSSVPDLMQTMNMFATSSPSSWVKPYPPEASFERIASLAISGAPRLLKEEEEEEENKGGLSYSVSSLYCSNYQSPSSQAGLAQPHYMSPPTSLLQKVNQMGSTGSNHINIFGFTGGSLPLSYSTSSFRTVDQVGLYFKNTANPTDQNLNDLVDSQAVVSTSVGVGGDDGRGMVLNDSKTSHFMRSGENVNEMELGGLTRDFLGVGEKELAEFNAMGSAAQPWS 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0387 444 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 74 IPR013087 -
Prci6g0387 444 MobiDBLite consensus disorder prediction 1 17 - -
Prci6g0387 444 Gene3D Classic Zinc Finger 48 75 - -
Prci6g0387 444 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
Prci6g0387 444 MobiDBLite consensus disorder prediction 1 34 - -
Prci6g0387 444 SMART c2h2final6 93 123 IPR013087 -
Prci6g0387 444 SMART c2h2final6 52 74 IPR013087 -
Prci6g0387 444 SMART c2h2final6 128 148 IPR013087 -
Prci6g0387 444 SUPERFAMILY beta-beta-alpha zinc fingers 51 148 IPR036236 -
Prci6g0387 444 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 431 IPR031140 -
Prci6g0387 444 Gene3D Classic Zinc Finger 87 176 - -
Prci6g0387 444 FunFam protein indeterminate-domain 12-like 31 99 - -
Prci6g0387 444 FunFam protein indeterminate-domain 5, chloroplastic-like 106 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0387 Prci-Chr6 2481021 2483449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0387 20 201 IDZ Gene Family AT3G50700 77.540 1.78e-106 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci6g0387 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0387 K25870 - tcc:18590071 405.986