Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0354 ATGTTAGATCTTAATCTCAATGCGGATTTAGCCGATTTGACTCATAACCATAACTCGGTCATGTTCCTTGACAAATTTCCTGAAGCTTCGGCGAATCAAATGGCGGAATCGGGGACCTCTAATTCATCTGTTGTCAATGCCGACGGGTCCAGTACTGGAGGAGGCGATGATGACTCTTGCTCTACACGCGCCGGCGACGTAGTCACCTTCAATTTCGATATCCTTAAGGTGGACAGCGGCAACGACGTCTCAACCAGGGAGCTGTTTCCAGTGAGTGGAACTAAAGGAGTGGATAGAGACTCAGGGATTTGGCAGGGGCAATCTTCATCGCCTTTTCCATCCAATGAGAGCTGGATGGAACTCTCATTCGATAGTCAAGGTGGCCGCGCACAGGCAAAGACGATTCAACTTCAGCAACAACCTCAGCCGCAGGTGAAGAAGAGCAGGAGAGGACCAAGGTCTCGGAGCTCCCAGTACAGAGGAGTCACCTTCTATAGGAGGACTGGCAGATGGGAATCACATATCTGGGATTGCGGCAAACAAGTCTATTTAGGCGGTTTTGACACTGCACATGCCGCTGCTAGAGCCTACGATCGAGCTGCTATTAAATTCAGGGGAGTTGATGCTGATATCAATTTCAACCTCAGTGATTATGAGGAGGATCTTAAACAGATGAAGAATCTCACCAAGGAGGAGTTTGTTCACATTCTTCGTCGCCAGAGTACCGGTTTCTCTAGGGGTAGCTCAAGATACCGAGGCGTAACACTACACAAATGTGGACGCTGGGAAGCTCGGATGGGGCAATTTCTTGGCAAAAAGTATATATACCTTGGGCTGTTCGACAGCGAAGTAGAAGCTGCAAGGGCTTACGATAGAGCAGCCATTAAGTGCAATGGAAGGGAGGCAGTAACTAACTTTGAGCCGAGTACTTATGAAGGGGAGTTGGACGCTGATGCAATCGATGAAGGTGTCAGTCACAATCTTGACCTCAATTTAGGCATAGCAACCCCAGGCAAAGGTCCCAATGAAAGCAGGGGCAATCTTGAGCTCCAGTCTTTTCCTTACAATATGCATGCCAGAACAAGTTCAACGGTGGCGACCAACACTGACTCAGTAAATGGCAATCGAGCTATGAAAAAGCTTCTAGTAACTGGAGATAGCCCTTCTGTATGGAATGGCATATTTCCAAATTTCTTTCCCAGTGAGGAAAGGGCAGAGATAATGAGGACGGGACTCCCCAGCTGGACGTGGCGAACATATGGCGAGCCAAGTGCTACCCCAGCTCCACAGTTCTCTGCTGCAGCATCATCAGGATTCTCCATTTCATCCACCTTTCCACCGTCCACTGCCATCTTCCCGGTGAAACCTATGAACTCACTCCCCCTCACTCTCTCTTTTTCCTCTTCATCCAGCACAGCTGCCCCCACCACATATCAGCATTATTGCCACATGAAGCACCCGCACTCTCCACCCTAA 1476 0.4912 MLDLNLNADLADLTHNHNSVMFLDKFPEASANQMAESGTSNSSVVNADGSSTGGGDDDSCSTRAGDVVTFNFDILKVDSGNDVSTRELFPVSGTKGVDRDSGIWQGQSSSPFPSNESWMELSFDSQGGRAQAKTIQLQQQPQPQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLSDYEEDLKQMKNLTKEEFVHILRRQSTGFSRGSSRYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDRAAIKCNGREAVTNFEPSTYEGELDADAIDEGVSHNLDLNLGIATPGKGPNESRGNLELQSFPYNMHARTSSTVATNTDSVNGNRAMKKLLVTGDSPSVWNGIFPNFFPSEERAEIMRTGLPSWTWRTYGEPSATPAPQFSAAASSGFSISSTFPPSTAIFPVKPMNSLPLTLSFSSSSSTAAPTTYQHYCHMKHPHSPP 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0354 491 Gene3D AP2/ERF domain 249 308 IPR036955 GO:0003700|GO:0006355
Prci6g0354 491 Gene3D AP2/ERF domain 157 215 IPR036955 GO:0003700|GO:0006355
Prci6g0354 491 MobiDBLite consensus disorder prediction 101 117 - -
Prci6g0354 491 MobiDBLite consensus disorder prediction 129 147 - -
Prci6g0354 491 SUPERFAMILY DNA-binding domain 249 308 IPR016177 GO:0003677
Prci6g0354 491 FunFam AP2-like ethylene-responsive transcription factor 157 216 - -
Prci6g0354 491 Pfam AP2 domain 158 206 IPR001471 GO:0003700|GO:0006355
Prci6g0354 491 Pfam AP2 domain 249 299 IPR001471 GO:0003700|GO:0006355
Prci6g0354 491 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 125 361 - -
Prci6g0354 491 MobiDBLite consensus disorder prediction 92 117 - -
Prci6g0354 491 FunFam AP2-like ethylene-responsive transcription factor 249 309 - -
Prci6g0354 491 SUPERFAMILY DNA-binding domain 157 215 IPR016177 GO:0003677
Prci6g0354 491 ProSiteProfiles AP2/ERF domain profile. 158 214 IPR001471 GO:0003700|GO:0006355
Prci6g0354 491 SMART rav1_2 250 313 IPR001471 GO:0003700|GO:0006355
Prci6g0354 491 SMART rav1_2 158 220 IPR001471 GO:0003700|GO:0006355
Prci6g0354 491 ProSiteProfiles AP2/ERF domain profile. 250 307 IPR001471 GO:0003700|GO:0006355
Prci6g0354 491 MobiDBLite consensus disorder prediction 33 58 - -
Prci6g0354 491 MobiDBLite consensus disorder prediction 129 159 - -
Prci6g0354 491 CDD AP2 158 216 IPR001471 GO:0003700|GO:0006355
Prci6g0354 491 CDD AP2 249 309 IPR001471 GO:0003700|GO:0006355
Prci6g0354 491 MobiDBLite consensus disorder prediction 33 60 - -
Prci6g0354 491 PRINTS Ethylene responsive element binding protein signature 251 262 IPR001471 GO:0003700|GO:0006355
Prci6g0354 491 PRINTS Ethylene responsive element binding protein signature 289 309 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0354 Prci-Chr6 2201775 2205777 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0354 73 333 AP2-EREBP Transcription Factor Family AT4G36920 65.314 1.43e-99 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Prci6g0354 AP2 3.2e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0354 K09284 - qsa:O6P43_000276 600.897