Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0295 ATGTCTGCAGCTCTGGATATGACCCTTGATGATATCATCAAGAAAAACAAGAAATCTGGATCTGGTAACTCCAGAGGTCGCGGCCGAGGATCTGGTCCTGGTCCTACTCGCCGTTTCCCCAATCGTGCCGCCAACCGTGCAGCTCCTTACACAACTACAAAGGCACCGGAGGCGACATGGCAGCATGATATGTTTGCAGATCAGCCCGTGGCACCGCTCGCAGCTCAAGGTGGTCGAGCGTCTTCTATAGAAACCGGGACTAAGCTCTACATATCTAATTTGGATTACGGTGTTTCGAACGAGGATATTAAGGAGTTGTTTTCTGAAGTTGGTGACCTAAAACGGTATGCAATCCATTACGACAGGAGTGGCAGATCAAAGGGCACAGCAGAAGTAGTCTTTTCACGACGGGTTGATGCTGTAGCCGCTGTGAAGAGATACCACAATGTTCAACTTGATGGTAAACCAATGAAGATAGAGATTGTGGGGACGAACATTGCCACACCTACGGCAGCTCCTGCTGCCAATGGAGCTGTTGGAAATACAAACGGTGTTCCTAGAATTGGCCAAGGTAGGGGTGGGGCACTTGGAAGGCCACGTGGTGGAGGTAGAGGACGTGGCTTTCAGAGGGGTCGAGGACGTGGAAGAGGTCGTGGAGAGAAGGTTTCTGCAGAAGATCTTGATGCTGAGTTGGAGAAGTATCATTCAGAGGCAATGCAAATAAACTGA 729 0.4993 MSAALDMTLDDIIKKNKKSGSGNSRGRGRGSGPGPTRRFPNRAANRAAPYTTTKAPEATWQHDMFADQPVAPLAAQGGRASSIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYAIHYDRSGRSKGTAEVVFSRRVDAVAAVKRYHNVQLDGKPMKIEIVGTNIATPTAAPAANGAVGNTNGVPRIGQGRGGALGRPRGGGRGRGFQRGRGRGRGRGEKVSAEDLDAELEKYHSEAMQIN 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0295 242 SMART FoP_duplication_2 169 242 IPR025715 -
Prci6g0295 242 MobiDBLite consensus disorder prediction 1 59 - -
Prci6g0295 242 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 157 IPR000504 GO:0003723
Prci6g0295 242 MobiDBLite consensus disorder prediction 177 227 - -
Prci6g0295 242 CDD RRM_THOC4 87 161 - -
Prci6g0295 242 Pfam C-terminal duplication domain of Friend of PRMT1 184 237 IPR025715 -
Prci6g0295 242 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 164 IPR000504 GO:0003723
Prci6g0295 242 Coils Coil 224 242 - -
Prci6g0295 242 SMART rrm1_1 88 160 IPR000504 GO:0003723
Prci6g0295 242 MobiDBLite consensus disorder prediction 213 227 - -
Prci6g0295 242 Gene3D - 74 225 IPR012677 -
Prci6g0295 242 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 240 - -
Prci6g0295 242 FunFam THO complex subunit 4 80 224 - -
Prci6g0295 242 SUPERFAMILY RNA-binding domain, RBD 68 193 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0295 Prci-Chr6 1689688 1693347 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0295 83 161 Eukaryotic Initiation Factors Gene Family AT2G36660 31.646 3.72e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0295 K12881 - qsa:O6P43_028263 306.605