Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0271 ATGAAACAATACCATGAGGTGACAGCTCAATTAGAACAAGCCTTGAGTGGAATTTCATATGATAAAATTGACATATCAGATGAAGTTAAAGAGCAGGTTGAGCTTGTTCTGGCACAATTCAGAAGGGCCAAAGGAGGGGTTGATGGACCTGATGATGAGTTATACGATGATATCTTGTCACTTTATGATAAGAGCACTGATGCAGCAACTGATCCAGCTGTTCTGAGGAGATTAGCTGAAAAATTGCAATTGATGGGAATATCTGATCTTACACAAGAGTCGCTAGCTTTGCATGAGATGGTGGCAGCAAGTAGTGGGGATCCAGGGGCAAGTATTGAGAAGATGTCAATGTTATTGAAAAAAATAAAGGATTACGTACAGACAGAGAATCTAGTCCAGGATGATATTGAAGGTGGAAAGGGCCTTTCTTCTCGCAGCAGCAGCCATGGGACAAGTGAAAAGCTTCATCAAGCCTCTATTATACCTGATGATTTTCGATGTCCAATTTCCTTGGAATTGATGAAGGATCCTGTTATTGTTTCAACAGGACAGACTTATGAGCGTTCTTGTATTGAGAAGTGGTTGGATGCCGGGCATGGCACCTGTCCTAAAACACAGCAGACACTTGCTAGCAATGTTCTCACACCCAATTATGCCTTACGAAGCCTCATAGCACAATGGTGTGAAGCCAATGGCATGGAACCTCCAAAACGACCCAGCAGTTCTCGGCCTAGTAAGTCAGCATCAGCCTGCTCACCAGCTGAGCGTAGTAAGATTGAAAATCTTCTCCGTAAGCTTACATCTGGTAATCCTGAAGACCAGAGATCAGCAGCAGGTGAGATCCGTCTTTTAGCAAAACGCAATGCAGATAATCGTGTGGCCATCGCTGAAGCTGGTGCAATACCACTCCTTGTTGGCCTCCTCTCTATTCCTGACTCCCGAACTCAAGAGCACGCCGTAACAGCACTTTTGAATCTTTCCATTTGTGAGAATAACAAAGGAAGTATCATATCTTCTGGGGCAGTTCCTGGCATTGTTCATGTGCTTAAGAAGGGCAGCATGGAAGCTCGGGAAAATGCAGCAGCCACACTTTTTAGCCTCTCAGTCGTTGATGAAAATAAGGTTACTATCGGATCCTCAGGGGCCATCCCACCACTAGTGACACTGCTGAGCGAGGGTACCCAAAGGGGTAAAAAAGATGCTGCAACGGCACTCTTCAATTTGTGCATATTCCAGGGTAACAAGGGAAAAGCAGTGAGGGCTGGTGTTGTTCCTACACTAATGCGACTGCTGACGGAACCTGGTGGGGGAATGGTGGATGAAGCATTGGCCATATTGGCAATATTGGCTAGCCATCCAGAAGGGAAGGTTGCAATTGGTGCTGCGGAGGCTGTACCCGTTTTGGTAGAGGTTATTGGGAATGGATCCCCAAGAAACAGAGAGAATGCAGCTGCCGTTTTAGTGCACCTTTGCTCCGGAGATCAGCAATATCTAGCGCAAGCTCAAGATCTTGGGGTGATGGGTCCATTGGCTGATCTGGCTCAAAATGGCACAGACAGAGGCAAAAGAAAGGCTGCACAATTGCTAGAGCGAATGAGCAGATTCCTTGAGCAGCAGCAGCTGCAGCAGCAAGAAGTTCGAACACAGAGCGAAGTGCAAGTTCTGAATGAGGATATACAGCCCCCTTCTATTGCTAACCTTATTGATAGCTGA 1713 0.4618 MKQYHEVTAQLEQALSGISYDKIDISDEVKEQVELVLAQFRRAKGGVDGPDDELYDDILSLYDKSTDAATDPAVLRRLAEKLQLMGISDLTQESLALHEMVAASSGDPGASIEKMSMLLKKIKDYVQTENLVQDDIEGGKGLSSRSSSHGTSEKLHQASIIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLDAGHGTCPKTQQTLASNVLTPNYALRSLIAQWCEANGMEPPKRPSSSRPSKSASACSPAERSKIENLLRKLTSGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSIPDSRTQEHAVTALLNLSICENNKGSIISSGAVPGIVHVLKKGSMEARENAAATLFSLSVVDENKVTIGSSGAIPPLVTLLSEGTQRGKKDAATALFNLCIFQGNKGKAVRAGVVPTLMRLLTEPGGGMVDEALAILAILASHPEGKVAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCSGDQQYLAQAQDLGVMGPLADLAQNGTDRGKRKAAQLLERMSRFLEQQQLQQQEVRTQSEVQVLNEDIQPPSIANLIDS 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0271 570 MobiDBLite consensus disorder prediction 233 256 - -
Prci6g0271 570 Pfam U-box domain 161 231 IPR003613 GO:0004842|GO:0016567
Prci6g0271 570 MobiDBLite consensus disorder prediction 238 254 - -
Prci6g0271 570 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 299 341 IPR000225 GO:0005515
Prci6g0271 570 MobiDBLite consensus disorder prediction 140 155 - -
Prci6g0271 570 SUPERFAMILY ARM repeat 259 556 IPR016024 -
Prci6g0271 570 FunFam RING-type E3 ubiquitin transferase 160 234 - -
Prci6g0271 570 Pfam Armadillo/beta-catenin-like repeat 288 327 IPR000225 GO:0005515
Prci6g0271 570 Pfam Armadillo/beta-catenin-like repeat 371 409 IPR000225 GO:0005515
Prci6g0271 570 SMART arm_5 452 492 IPR000225 GO:0005515
Prci6g0271 570 SMART arm_5 288 328 IPR000225 GO:0005515
Prci6g0271 570 SMART arm_5 494 534 IPR000225 GO:0005515
Prci6g0271 570 SMART arm_5 411 451 IPR000225 GO:0005515
Prci6g0271 570 SMART arm_5 370 410 IPR000225 GO:0005515
Prci6g0271 570 SMART arm_5 329 369 IPR000225 GO:0005515
Prci6g0271 570 Pfam Neurochondrin 424 542 IPR008709 -
Prci6g0271 570 Coils Coil 538 558 - -
Prci6g0271 570 FunFam RING-type E3 ubiquitin transferase 244 395 - -
Prci6g0271 570 MobiDBLite consensus disorder prediction 136 157 - -
Prci6g0271 570 FunFam RING-type E3 ubiquitin transferase 435 553 - -
Prci6g0271 570 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 161 234 IPR013083 -
Prci6g0271 570 ProSiteProfiles U-box domain profile. 160 234 IPR003613 GO:0004842|GO:0016567
Prci6g0271 570 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 422 464 IPR000225 GO:0005515
Prci6g0271 570 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 340 382 IPR000225 GO:0005515
Prci6g0271 570 PANTHER U BOX DOMAIN-CONTAINING 3 534 - -
Prci6g0271 570 SMART Ubox_2 164 227 IPR003613 GO:0004842|GO:0016567
Prci6g0271 570 CDD RING-Ubox_PUB 162 214 IPR045210 -
Prci6g0271 570 Gene3D - 245 569 IPR011989 -
Prci6g0271 570 SUPERFAMILY RING/U-box 161 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0271 Prci-Chr6 1555807 1566665 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0271 6 540 U-box Gene Family AT3G46510 74.067 0.0 810
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0271 - - gmx:100812160 893.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci6g0271 6 1555807 1566665 Prci6g0271 6 1555807 1566665 ECH