Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0270 ATGCTTGAAGCTGCCATGGAGGAGGACAGAGCAGCTATAGTGCAGATCTCGATTGAGTTGATCAATGAGATAGCTGCGATCTCGGACTACCGGAGCATAGTCAAGAAGCAGTACTGCAATTTGGCGAGAAGGTTGAAGTTGCTGACTCCAATGTTTGAAGAGATTAGGGACAGCAAAGAGGCGTTCCCTGAAGAGACCTTGAAAGCTTTGATTTCCTTCAAGGGAGCTTTAGAATCGGCCAGACAACTTCTCAGATTCGGGAGCGAGGCCAGCAAGATTTATATGGTCTTAGAGAGGGAACAAATTATGAAACAATACCATGAGGTGACAGCTCAATTAGAACAAGCCTTGAGTGGAATTTCATATGATAAAATTGACATATCAGATGAAGTTAAAGAGCAGGTTGAGCTTGTTCTGGCACAATTCAGAAGGGCCAAAGGAGGGGTTGATGGACCTGATGATGAGTTATACGATGATATCTTGTCACTTTATGATAAGAGCACTGATGCAGCAACTGATCCAGCTGTTCTGAGGAGATTAGCTGAAAAATTGCAATTGATGGGAATATCTGATCTTACACAAGAGTCGCTAGCTTTGCATGAGATGGTGGCAGCAAGTAGTGGGGATCCAGGGGCAAGTATTGAGAAGATGTCAATGTTATTGAAAAAAATAAAGGATTACGTACAGACAGAGAATCTAGTCCAGGATGATATTGAAGGTGGAAAGGGCCTTTCTTCTCGCAGCAGCAGCCATGGGACAAGTGAAAAGCTTCATCAAGCCTCTATTATACCTGATGATTTTCGATGTCCAATTTCCTTGGAATTGATGAAGGATCCTGTTATTGTTTCAACAGGACAGACTTATGAGCGTTCTTGTATTGAGAAGTGGTTGGATGCCGGGCATGGCACCTGTCCTAAAACACAGCAGACACTTGCTAGCAATGTTCTCACACCCAATTATGCCTTACGAAGCCTCATAGCACAATGGTGTGAAGCCAATGGCATGGAACCTCCAAAACGACCCAGCAGTTCTCGGCCTAGTAAGTCAGCATCAGCCTGCTCACCAGCTGAGCGTAGTAAGATTGAAAATCTTCTCCGTAAGCTTACATCTGGTAATCCTGAAGACCAGAGATCAGCAGCAGGTGAGATCCGTCTTTTAGCAAAACGCAATGCAGATAATCGTGTGGCCATCGCTGAAGCTGGTGCAATACCACTCCTTGTTGGCCTCCTCTCTATTCCTGACTCCCGAACTCAAGAGCACGCCGTAACAGCACTTTTGAATCTTTCCATTTGTGAGAATAACAAAGGAAGTATCATATCTTCTGGGGCAGTTCCTGGCATTGTTCATGTGCTTAAGAAGGGCAGCATGGAAGCTCGGGAAAATGCAGCAGCCACACTTTTTAGCCTCTCAGTCGTTGATGAAAATAAGGTTACTATCGGATCCTCAGGGGCCATCCCACCACTAGTGACACTGCTGAGCGAGGGTACCCAAAGGGGTAAAAAAGATGCTGCAACGGCACTCTTCAATTTGTGCATATTCCAGGGTAACAAGGGAAAAGCAGTGAGGGCTGGTGTTGTTCCTACACTAATGCGACTGCTGACGGAACCTGGTGGGGGAATGGTGGATGAAGCATTGGCCATATTGGCAATATTGGCTAGCCATCCAGAAGGGAAGGTTGCAATTGGTGCTGCGGAGGCTGTACCCGTTTTGGTAGAGGTTATTGGGAATGGATCCCCAAGAAACAGAGAGAATGCAGCTGCCGTTTTAGTGCACCTTTGCTCCGGAGATCAGCAATATCTAGCGCAAGCTCAAGATCTTGGGGTGATGGGTCCATTGGCTGATCTGGCTCAAAATGGCACAGACAGAGGCAAAAGAAAGGCTGCACAATTGCTAGAGCGAATGAGCAGATTCCTTGAGCAGCAGCAGCTGCAGCAGCAAGAAGTTCGAACACAGAGCGAAGTGCAAGTTCTGAATGAGGATATACAGCCCCCTTCTATTGCTAACCTTATTGATAGCTGA 2019 0.4626 MLEAAMEEDRAAIVQISIELINEIAAISDYRSIVKKQYCNLARRLKLLTPMFEEIRDSKEAFPEETLKALISFKGALESARQLLRFGSEASKIYMVLEREQIMKQYHEVTAQLEQALSGISYDKIDISDEVKEQVELVLAQFRRAKGGVDGPDDELYDDILSLYDKSTDAATDPAVLRRLAEKLQLMGISDLTQESLALHEMVAASSGDPGASIEKMSMLLKKIKDYVQTENLVQDDIEGGKGLSSRSSSHGTSEKLHQASIIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLDAGHGTCPKTQQTLASNVLTPNYALRSLIAQWCEANGMEPPKRPSSSRPSKSASACSPAERSKIENLLRKLTSGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSIPDSRTQEHAVTALLNLSICENNKGSIISSGAVPGIVHVLKKGSMEARENAAATLFSLSVVDENKVTIGSSGAIPPLVTLLSEGTQRGKKDAATALFNLCIFQGNKGKAVRAGVVPTLMRLLTEPGGGMVDEALAILAILASHPEGKVAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCSGDQQYLAQAQDLGVMGPLADLAQNGTDRGKRKAAQLLERMSRFLEQQQLQQQEVRTQSEVQVLNEDIQPPSIANLIDS 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0270 672 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 401 443 IPR000225 GO:0005515
Prci6g0270 672 SUPERFAMILY RING/U-box 263 339 - -
Prci6g0270 672 SUPERFAMILY ARM repeat 361 658 IPR016024 -
Prci6g0270 672 Gene3D - 347 671 IPR011989 -
Prci6g0270 672 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 336 IPR013083 -
Prci6g0270 672 MobiDBLite consensus disorder prediction 340 356 - -
Prci6g0270 672 MobiDBLite consensus disorder prediction 242 257 - -
Prci6g0270 672 SMART Ubox_2 266 329 IPR003613 GO:0004842|GO:0016567
Prci6g0270 672 Pfam U-box domain 263 333 IPR003613 GO:0004842|GO:0016567
Prci6g0270 672 FunFam RING-type E3 ubiquitin transferase 10 123 - -
Prci6g0270 672 Pfam Neurochondrin 526 644 IPR008709 -
Prci6g0270 672 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 442 484 IPR000225 GO:0005515
Prci6g0270 672 Coils Coil 640 660 - -
Prci6g0270 672 FunFam RING-type E3 ubiquitin transferase 537 655 - -
Prci6g0270 672 MobiDBLite consensus disorder prediction 238 259 - -
Prci6g0270 672 ProSiteProfiles U-box domain profile. 262 336 IPR003613 GO:0004842|GO:0016567
Prci6g0270 672 CDD RING-Ubox_PUB 264 316 IPR045210 -
Prci6g0270 672 Pfam Armadillo/beta-catenin-like repeat 473 511 IPR000225 GO:0005515
Prci6g0270 672 Pfam Armadillo/beta-catenin-like repeat 390 429 IPR000225 GO:0005515
Prci6g0270 672 Gene3D - 10 123 IPR036537 GO:0007166
Prci6g0270 672 MobiDBLite consensus disorder prediction 335 358 - -
Prci6g0270 672 SMART arm_5 554 594 IPR000225 GO:0005515
Prci6g0270 672 SMART arm_5 390 430 IPR000225 GO:0005515
Prci6g0270 672 SMART arm_5 596 636 IPR000225 GO:0005515
Prci6g0270 672 SMART arm_5 472 512 IPR000225 GO:0005515
Prci6g0270 672 SMART arm_5 431 471 IPR000225 GO:0005515
Prci6g0270 672 SMART arm_5 513 553 IPR000225 GO:0005515
Prci6g0270 672 CDD MLKL_NTD 18 143 - -
Prci6g0270 672 FunFam RING-type E3 ubiquitin transferase 346 497 - -
Prci6g0270 672 FunFam RING-type E3 ubiquitin transferase 262 336 - -
Prci6g0270 672 PANTHER U BOX DOMAIN-CONTAINING 35 636 - -
Prci6g0270 672 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 524 566 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0270 Prci-Chr6 1555805 1566665 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0270 6 642 U-box Gene Family AT3G46510 71.317 0.0 924
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0270 - - pvy:116146246 1024.23