Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0265 ATGAAGGTGAGAAGGAATTCCAAGAAAGCAAATTATGCTGCCAAGAATGCTCCCCCATTCTGTGAGATATGGTTTGTTCACAAAGGTAAACACATATGGACAAGAGAAGCTTCTGAAAATCCTTGTTCCTTCTCTTCACAATCTCAACCTGAGATTGCTGCCTCAGGCAGCTTGTTAAGTAGGTCATTTCAATACGGTAAGAGTGAATTACTCAATAGATCAAATTCTGCAAGAACTACAATCTGCACAGGAATTGATAGTTGGTCTCAGGGCGAAATCTTGGAAACAGATCCAACTTCTTCATCAAAATCATCCACTTGTGTCAGTCACTGTTCTCCCCAAAATTCTACCGGGGGTTATTTGGAGACTTCTTTGGACGTTGAAGAAGATATACTTTGTAGTCAACTTACTGAAGCCAAAATAGAAGTTGAGGCTGCGAGAGATAAGGGTTTTGCAGAGCTTTTGAAATGCAAAAGATTTGAAGCAGAAGCTATAGAGGCCATAAAGAAGGTCAATATGTTTGAATCTGCTCGTGCATATGAAGTAAAGCTAAGAAAGGAGGCAGAGAATGAACTGAGAGCCACATTACAGGAGCAACAAAGGCTCTTGGATGAGAGTGAAGAAGTTGCTAGTGTGCTACAGAGGACCATGAGAAATATTGCCCTTCTGGACAGTCGTGTACAGGAGGCAAACTGCAGGCATGATGAAGCTGCAGATGAGTTATTACTAATTCAAGCATCCATCTCAACCCTGTGGCATGAAAAGCAGCAGATTAGGCGACAAAAAATGGAAGCCCACCGCTGGCTTGACCGATGGAAAAGTCGGGGACAATTTGGAGTTGCACACTGCCATGGGTTCATTGGATTTGCTGATGAATTACCAGAGTTAGCAGAATTTTCACTGTCAGATCTTCAAAATGCTACGTGCAATTTTTCTGAGAGCTTCAAAATTGCACAGGGAGGATATGGTTGTATTTATAAGGGGGAAATGCTGGGTAGAACAGTTGCTATAAGGAAGTTCCATCCACATAACATCCAAGGACCAGCTGAGTTTCATCAAGAGGTTCAAGTTCTTGGTAGTCTTCAGCACCCTCATCTATTGACTTTGCTTGGTGTTTGCCCTGAAGCCTGGTCTCTGGTGTATGAGTACTTACCCAATGGAAGTCTTCAAGACCTATTCCGGAAAAATAACAATCCCTCTTCGACATGGAATAGCCGAGCACGTATGATTGCTGAAATTGCTAGTGCTCTTTGCTTTTTACACACTTCCAAACCTAAAACTATTGTCCATGGTAATCTAAAGCCTGAAACGATACTTCTTGACTCTGCACTTCGTTGCAAGATATGTGGATTTGGGTTCTGCAGACTGTTGACAGAGGAGTCACTCTATCGTCCCAGTTTCAGATTCAGCACTGAGCCAAAGGGTACTTCAGCATACACAGATCCAGAGCTTGAGAGGACTGGAATACTAACACCGAAGTCTGATATCTATTCCTTTGGACTTATCATTTTGCAACTCCTCACTGGCAGGACTATTCCAGTTGGGTTAGCTGGTGAAGTGCGCAAGGCAGTCTCATGTGGAAAATTGTCTTCAATTTTGGATTCTTCAGCTGGAGAATGGCCTCCAGCTGTGGCAACACAATTGGTTGAACTAGGACTGCAATGCTGTCAGCAAAATGGCAGAGATAGACCAGAGCTAACACCTACTTTAGTGAGGGAATTGGAGCAATTGCATGTTTCAGAAGATCGACCAGTGCCATCATTTTTCTTGTGTCCTATCCTTCAGGAAATAATGCACGATCCCCAAGTTGCGGCAGACGGATTCACTTACGAAGGGGAAGCCATTCGTGAATGGCTGGAAAACGGTCATGAGACTTCTCCCATGACTAATTTAAAATTGAGTCACCTCCATCTCACGCCCAATCATGCACTTCGTCTTGCGATCCAAGACTGGCTTTGCAAATCCTGA 1968 0.4345 MKVRRNSKKANYAAKNAPPFCEIWFVHKGKHIWTREASENPCSFSSQSQPEIAASGSLLSRSFQYGKSELLNRSNSARTTICTGIDSWSQGEILETDPTSSSKSSTCVSHCSPQNSTGGYLETSLDVEEDILCSQLTEAKIEVEAARDKGFAELLKCKRFEAEAIEAIKKVNMFESARAYEVKLRKEAENELRATLQEQQRLLDESEEVASVLQRTMRNIALLDSRVQEANCRHDEAADELLLIQASISTLWHEKQQIRRQKMEAHRWLDRWKSRGQFGVAHCHGFIGFADELPELAEFSLSDLQNATCNFSESFKIAQGGYGCIYKGEMLGRTVAIRKFHPHNIQGPAEFHQEVQVLGSLQHPHLLTLLGVCPEAWSLVYEYLPNGSLQDLFRKNNNPSSTWNSRARMIAEIASALCFLHTSKPKTIVHGNLKPETILLDSALRCKICGFGFCRLLTEESLYRPSFRFSTEPKGTSAYTDPELERTGILTPKSDIYSFGLIILQLLTGRTIPVGLAGEVRKAVSCGKLSSILDSSAGEWPPAVATQLVELGLQCCQQNGRDRPELTPTLVRELEQLHVSEDRPVPSFFLCPILQEIMHDPQVAADGFTYEGEAIREWLENGHETSPMTNLKLSHLHLTPNHALRLAIQDWLCKS 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0265 655 Pfam U-box domain 585 654 IPR003613 GO:0004842|GO:0016567
Prci6g0265 655 Pfam Protein tyrosine and serine/threonine kinase 316 567 IPR001245 GO:0004672|GO:0006468
Prci6g0265 655 SUPERFAMILY Protein kinase-like (PK-like) 296 572 IPR011009 -
Prci6g0265 655 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 585 655 IPR013083 -
Prci6g0265 655 CDD RING-Ubox_WDSUB1-like 586 641 - -
Prci6g0265 655 SMART Ubox_2 588 651 IPR003613 GO:0004842|GO:0016567
Prci6g0265 655 ProSiteProfiles Protein kinase domain profile. 311 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci6g0265 655 MobiDBLite consensus disorder prediction 95 116 - -
Prci6g0265 655 Coils Coil 185 240 - -
Prci6g0265 655 PANTHER OS02G0152300 PROTEIN 6 649 - -
Prci6g0265 655 SUPERFAMILY RING/U-box 582 654 - -
Prci6g0265 655 ProSiteProfiles U-box domain profile. 584 655 IPR003613 GO:0004842|GO:0016567
Prci6g0265 655 Gene3D Phosphorylase Kinase; domain 1 289 383 - -
Prci6g0265 655 Gene3D Transferase(Phosphotransferase) domain 1 384 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0265 Prci-Chr6 1489721 1496031 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0265 7 652 U-box Gene Family AT2G45910 37.890 4.79e-143 435
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Prci6g0265 PK_Tyr_Ser-Thr 1.2e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0265 - - pcin:129312791 1313.9