Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0260 ATGGAGGTCTTGAACCCTTCTCATCCTCCTCAGCATCAGCAGTATGTGGCCGCCAGAGACCCCTTCCATGGCTACTCGCCCCCTCTCACTCTGACTCTGCCCTTCGCCTTCCAGGAAGCCGCCACCTCTCAACTAACCTACCCCATGGCAGAATGCACTGAATCCGTTTACGTTGCCGTCGGAAAGTCGGTGGACAAAACCGTCCATTTGCTTCGATGGACTTTCGGCCGCTTTAGCAACTCACCAATTTGCATTCTTCATGTTCATCAGCCTTCCTCTATGATCCCCACTCTTTTAGGAAAATTGCCAGCAACCCAAGCAAATCCTGAAGTTGTATCTGCTTTTAGAAGAGAGGAAAGAGATCAAACCACGAGGCTTTTGGAAAATTACCTGAGCATTTGCCGTGTAGCTAAGGTTGAGGCAACAAGTGTGATAGGTGAAGCAGAGCAAGCGCAGAAAGGAATCATTGATTTAATCATCAAGCATGGTGTTAGGAAGCTTGTTATAGGAGCAGTGCCCGACAATCGCATGAAGGTGAGAAGGAATTCCAAGAAAGCAAATTATGCTGCCAAGAATGCTCCCCCATTCTGTGAGATATGGTTTGTTCACAAAGATCCAACTTCTTCATCAAAATCATCCACTTGTGTCAGTCACTGTTCTCCCCAAAATTCTACCGGGGGTTATTTGGAGACTTCTTTGGACGTTGAAGAAGATATACTTTGTAGTCAACTTACTGAAGCCAAAATAGAAGTTGAGGCTGCGAGAGATAAGGGTTTTGCAGAGCTTTTGAAATGCAAAAGATTTGAAGCAGAAGCTATAGAGGCCATAAAGAAGGTCAATATGTTTGAATCTGCTCGTGCATATGAAGTAAAGCTAAGAAAGGAGGCAGAGAATGAACTGAGAGCCACATTACAGGAGCAACAAAGGCTCTTGGATGAGAGTGAAGAAGTTGCTAGTGTGCTACAGAGGACCATGAGAAATATTGCCCTTCTGGACAGTCGTGTACAGGAGGCAAACTGCAGGCATGATGAAGCTGCAGATGAGTTATTACTAATTCAAGCATCCATCTCAACCCTGTGGCATGAAAAGCAGCAGATTAGGCGACAAAAAATGGAAGCCCACCGCTGGCTTGACCGATGGAAAAGTCGGGGACAATTTGGAGTTGCACACTGCCATGGGTTCATTGGATTTGCTGATGAATTACCAGAGTTAGCAGAATTTTCACTGTCAGATCTTCAAAATGCTACGTGCAATTTTTCTGAGAGCTTCAAAATTGCACAGGGAGGATATGGTTGTATTTATAAGGGGGAAATGCTGGGTAGAACAGTTGCTATAAGGAAGTTCCATCCACATAACATCCAAGGACCAGCTGAGTTTCATCAAGAGGTTCAAGTTCTTGGTAGTCTTCAGCACCCTCATCTATTGACTTTGCTTGGTGTTTGCCCTGAAGCCTGGTCTCTGGTGTATGAGTACTTACCCAATGGAAGTCTTCAAGACCTATTCCGGAAAAATAACAATCCCTCTTCGACATGGAATAGCCGAGCACGTATGATTGCTGAAATTGCTAGTGCTCTTTGCTTTTTACACACTTCCAAACCTAAAACTATTGTCCATGGTAATCTAAAGCCTGAAACGATACTTCTTGACTCTGCACTTCGTTGCAAGATATGTGGATTTGGGTTCTGCAGACTGTTGACAGAGGAGTCACTCTATCGTCCCAGTTTCAGATTCAGCACTGAGCCAAAGGGTACTTCAGCATACACAGATCCAGAGCTTGAGAGGACTGGAATACTAACACCGAAGTCTGATATCTATTCCTTTGGACTTATCATTTTGCAACTCCTCACTGGCAGGACTATTCCAGTTGGGTTAGCTGGTGAAGTGCGCAAGGCAGTCTCATGTGGAAAATTGTCTTCAATTTTGGATTCTTCAGCTGGAGAATGGCCTCCAGCTGTGGCAACACAATTGGTTGAACTAGGACTGCAATGCTGTCAGCAAAATGGCAGAGATAGACCAGAGCTAACACCTACTTTAGTGAGGGAATTGGAGCAATTGCATGTTTCAGAAGATCGACCAGTGCCATCATTTTTCTTGTGTCCTATCCTTCAGGAAATAATGCACGATCCCCAAGTTGCGGCAGACGGATTCACTTACGAAGGGGAAGCCATTCGTGAATGGCTGGAAAACGGTCATGAGACTTCTCCCATGACTAATTTAAAATTGAGTCACCTCCATCTCACGCCCAATCATGCACTTCGTCTTGCGATCCAAGACTGGCTTTGCAAATCCTGA 2292 0.4503 MEVLNPSHPPQHQQYVAARDPFHGYSPPLTLTLPFAFQEAATSQLTYPMAECTESVYVAVGKSVDKTVHLLRWTFGRFSNSPICILHVHQPSSMIPTLLGKLPATQANPEVVSAFRREERDQTTRLLENYLSICRVAKVEATSVIGEAEQAQKGIIDLIIKHGVRKLVIGAVPDNRMKVRRNSKKANYAAKNAPPFCEIWFVHKDPTSSSKSSTCVSHCSPQNSTGGYLETSLDVEEDILCSQLTEAKIEVEAARDKGFAELLKCKRFEAEAIEAIKKVNMFESARAYEVKLRKEAENELRATLQEQQRLLDESEEVASVLQRTMRNIALLDSRVQEANCRHDEAADELLLIQASISTLWHEKQQIRRQKMEAHRWLDRWKSRGQFGVAHCHGFIGFADELPELAEFSLSDLQNATCNFSESFKIAQGGYGCIYKGEMLGRTVAIRKFHPHNIQGPAEFHQEVQVLGSLQHPHLLTLLGVCPEAWSLVYEYLPNGSLQDLFRKNNNPSSTWNSRARMIAEIASALCFLHTSKPKTIVHGNLKPETILLDSALRCKICGFGFCRLLTEESLYRPSFRFSTEPKGTSAYTDPELERTGILTPKSDIYSFGLIILQLLTGRTIPVGLAGEVRKAVSCGKLSSILDSSAGEWPPAVATQLVELGLQCCQQNGRDRPELTPTLVRELEQLHVSEDRPVPSFFLCPILQEIMHDPQVAADGFTYEGEAIREWLENGHETSPMTNLKLSHLHLTPNHALRLAIQDWLCKS 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0260 763 SUPERFAMILY Protein kinase-like (PK-like) 404 680 IPR011009 -
Prci6g0260 763 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 74 178 - -
Prci6g0260 763 CDD RING-Ubox_WDSUB1-like 694 749 - -
Prci6g0260 763 Pfam Protein tyrosine and serine/threonine kinase 424 675 IPR001245 GO:0004672|GO:0006468
Prci6g0260 763 Gene3D Phosphorylase Kinase; domain 1 397 491 - -
Prci6g0260 763 Pfam U-box domain 693 762 IPR003613 GO:0004842|GO:0016567
Prci6g0260 763 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 693 763 IPR013083 -
Prci6g0260 763 ProSiteProfiles Protein kinase domain profile. 419 685 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci6g0260 763 Gene3D Transferase(Phosphotransferase) domain 1 492 692 - -
Prci6g0260 763 Coils Coil 293 348 - -
Prci6g0260 763 CDD STK_N 55 204 - -
Prci6g0260 763 PANTHER OS02G0152300 PROTEIN 56 757 - -
Prci6g0260 763 SMART Ubox_2 696 759 IPR003613 GO:0004842|GO:0016567
Prci6g0260 763 SUPERFAMILY RING/U-box 690 762 - -
Prci6g0260 763 ProSiteProfiles U-box domain profile. 692 763 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0260 Prci-Chr6 1489721 1496720 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0260 234 760 U-box Gene Family AT2G45910 40.809 1.43e-131 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Prci6g0260 PK_Tyr_Ser-Thr 1.7e-32 CL0016