Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0254 ATGGGAAGTTGTTTGGGCACCCAAATTAAAGCTGAGAGCCAGTGTAACTCAGGTATGTTGATCAGTTCCTTTTGTGATCGACTTCTCAGATGGTCGACTTCAAAACACGTGAGCACAGATGGAAGTGATCTGCGCATCACGGGTAGCGAGGTTTCAAAGGCCTCGGCGACTAATACTAGTCTGAGTATGGGTGAGATCTTGCACTCAGCCAATTTGAAGAGCTTTACTTATGCAGAACTGAAGGCGGCCACGCGAAATTTCCGGCCAGATAATGTTTTAGGAGAAGGTGGTTTTGGATCAGTTTTCAAAGGGTGGATTGATGAGAAGTCCTTAACTGCTGCCAAGCCTGGCACTGGCATTGTTATTGCTGTGAAAAGACTTAAACAAGATAGTATGCAAGGTCACAGTGAGTGGTTGGCTGAAGTGAATTGCCTAGGACGATTTTCTCATCCCCATCTTGTAAAGTTGATTGGGTATTGCCTTGAAGACGAACACCGCCTTCTGGCGTATGAATTTATGCCTCGAGGCAGCCTGGAGAATCATTTATTCAGGAGGGGCTCTTACTTTCAACCTCTCTCTTGGAGCCTCCGTTTGAAGGTCGCTCTAGGTGCTGCTAGAGGGCTTGCATTCCTTCACGGTGCTGAAACAAAAGTGATATATAGGGACTTCAAGACCTCAAATATCTTGCTTGATTCAAACTACAATCCAAAACTTTCTGATTTTGGGTTGGCCAGGGATGGACCAGCAGGGGACGAAAGTCATGTCTCCACTAGAGTATTAGGAACCTATGGATATACAGCTCCTGAATATGTAGCCACCGGTCACCTGACTTCAAAGAGTGACGTCTATAGTTTTGGAGTAGTGCTGGTGGAAATGTTATCAGGTCGGCGAGCAATGGACAGGAGTCGACCATCAGGACAGCGCAACATGGTGCAGTGGGCTAAGCCATACCTGGCAAACAAACGCAAACTTTTTCGTGTGCTTGATAACCGTCTTGAAGGCCAGTATACAATAGACGAGGCGTACAAGACAGCTACACTGGCATTGCGATGCATTTCAACGGAATCCAAGTTCAGGCCAAGCATGGACGAGATTGTTTCTGAGTTGGAGCAGCTTCAAGTTCCCAGTGGAAATGGAGGCAAACAAAAGCCCGCTGTTAATAAATCCAGTGGTAGAAGAAGTGAAGGCGATGCTAAGAATGGGACGACCCCCACGGTTTATCCCCGTCCCTCTGCGTCCCCACTCTATGCTTGA 1254 0.4721 MGSCLGTQIKAESQCNSGMLISSFCDRLLRWSTSKHVSTDGSDLRITGSEVSKASATNTSLSMGEILHSANLKSFTYAELKAATRNFRPDNVLGEGGFGSVFKGWIDEKSLTAAKPGTGIVIAVKRLKQDSMQGHSEWLAEVNCLGRFSHPHLVKLIGYCLEDEHRLLAYEFMPRGSLENHLFRRGSYFQPLSWSLRLKVALGAARGLAFLHGAETKVIYRDFKTSNILLDSNYNPKLSDFGLARDGPAGDESHVSTRVLGTYGYTAPEYVATGHLTSKSDVYSFGVVLVEMLSGRRAMDRSRPSGQRNMVQWAKPYLANKRKLFRVLDNRLEGQYTIDEAYKTATLALRCISTESKFRPSMDEIVSELEQLQVPSGNGGKQKPAVNKSSGRRSEGDAKNGTTPTVYPRPSASPLYA 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0254 417 Gene3D Transferase(Phosphotransferase) domain 1 173 387 - -
Prci6g0254 417 PANTHER OS01G0588500 PROTEIN-RELATED 53 373 - -
Prci6g0254 417 SUPERFAMILY Protein kinase-like (PK-like) 62 369 IPR011009 -
Prci6g0254 417 ProSitePatterns Protein kinases ATP-binding region signature. 93 125 IPR017441 GO:0005524
Prci6g0254 417 Pfam Protein tyrosine and serine/threonine kinase 91 369 IPR001245 GO:0004672|GO:0006468
Prci6g0254 417 Gene3D Phosphorylase Kinase; domain 1 63 172 - -
Prci6g0254 417 MobiDBLite consensus disorder prediction 371 417 - -
Prci6g0254 417 MobiDBLite consensus disorder prediction 371 387 - -
Prci6g0254 417 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Prci6g0254 417 CDD STKc_IRAK 93 372 - -
Prci6g0254 417 FunFam Probable serine/threonine-protein kinase PBL8 173 388 - -
Prci6g0254 417 ProSiteProfiles Protein kinase domain profile. 87 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci6g0254 417 FunFam Serine/threonine-protein kinase BIK1 54 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0254 Prci-Chr6 1466734 1469502 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0254 65 369 Glycoside Hydrolase AT3G07070 46.732 3.89e-99 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Prci6g0254 PK_Tyr_Ser-Thr 8.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0254 - - qsu:111987244 610.527