Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0252 ATGGGAAGTTGTTTGGGCACCCAAATTAAAGCTGAGAGCCAGTGTAACTCAGGTATGTTGATCAGTTCCTTTTGTGATCGACTTCTCAGATGGTCGACTTCAAAACACGTGAGCACAGATGGAAGTGATCTGCGCATCACGGGTAGCGAGGTTTCAAAGGCCTCGGCGACTAATACTAGTCTGAGTATGGGTGAGATCTTGCACTCAGCCAATTTGAAGAGCTTTACTTATGCAGAACTGAAGGCGGCCACGCGAAATTTCCGGCCAGATAATGTTTTAGGAGAAGGTGGTTTTGGATCAGTTTTCAAAGGGTGGATTGATGAGAAGTCCTTAACTGCTGCCAAGCCTGGCACTGGCATTGTTATTGCTGTGAAAAGACTTAAACAAGATAGTATGCAAGGTCACAGTGAGTGGTTGGCTGAAGTGAATTGCCTAGGACGATTTTCTCATCCCCATCTTGTAAAGTTGATTGGGTATTGCCTTGAAGACGAACACCGCCTTCTGGCGTATGAATTTATGCCTCGAGGCAGCCTGGAGAATCATTTATTCAGGAGGGGCTCTTACTTTCAACCTCTCTCTTGGAGCCTCCGTTTGAAGGTCGCTCTAGGTGCTGCTAGAGGGCTTGCATTCCTTCACGGTGCTGAAACAAAAGTGATATATAGGGACTTCAAGACCTCAAATATCTTGCTTGATTCAAACTACAATCCAAAACTTTCTGATTTTGGGTTGGCCAGGGATGGACCAGCAGGGGACGAAAGTCATGTCTCCACTAGAGTATTAGGAACCTATGGATATACAGCTCCTGAATATGTAGCCACCGTCATGGCAGGTCACCTGACTTCAAAGAGTGACGTCTATAGTTTTGGAGTAGTGCTGGTGGAAATGTTATCAGGTCGGCGAGCAATGGACAGGAGTCGACCATCAGGACAGCGCAACATGGTGCAGTGGGCTAAGCCATACCTGGCAAACAAACGCAAACTTTTTCGTGTGCTTGATAACCGTCTTGAAGGCCAGTATACAATAGACGAGGCGTACAAGACAGCTACACTGGCATTGCGATGCATTTCAACGGAATCCAAGTTCAGGCCAAGCATGGACGAGATTGTTTCTGAGTTGGAGCAGCTTCAAGTTCCCAGTGGAAATGGAGGCAAACAAAAGCCCGCTGTTAATAAATCCAGTGGTAGAAGAAGTGAAGGCGATGCTAAGAATGGGACGACCCCCACGGTTTATCCCCGTCCCTCTGCGTCCCCACTCTATGCTTGA 1263 0.4727 MGSCLGTQIKAESQCNSGMLISSFCDRLLRWSTSKHVSTDGSDLRITGSEVSKASATNTSLSMGEILHSANLKSFTYAELKAATRNFRPDNVLGEGGFGSVFKGWIDEKSLTAAKPGTGIVIAVKRLKQDSMQGHSEWLAEVNCLGRFSHPHLVKLIGYCLEDEHRLLAYEFMPRGSLENHLFRRGSYFQPLSWSLRLKVALGAARGLAFLHGAETKVIYRDFKTSNILLDSNYNPKLSDFGLARDGPAGDESHVSTRVLGTYGYTAPEYVATVMAGHLTSKSDVYSFGVVLVEMLSGRRAMDRSRPSGQRNMVQWAKPYLANKRKLFRVLDNRLEGQYTIDEAYKTATLALRCISTESKFRPSMDEIVSELEQLQVPSGNGGKQKPAVNKSSGRRSEGDAKNGTTPTVYPRPSASPLYA 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0252 420 PANTHER OS01G0588500 PROTEIN-RELATED 53 376 - -
Prci6g0252 420 Pfam Protein tyrosine and serine/threonine kinase 91 372 IPR001245 GO:0004672|GO:0006468
Prci6g0252 420 ProSitePatterns Protein kinases ATP-binding region signature. 93 125 IPR017441 GO:0005524
Prci6g0252 420 SUPERFAMILY Protein kinase-like (PK-like) 62 372 IPR011009 -
Prci6g0252 420 CDD STKc_IRAK 93 375 - -
Prci6g0252 420 MobiDBLite consensus disorder prediction 374 420 - -
Prci6g0252 420 MobiDBLite consensus disorder prediction 374 390 - -
Prci6g0252 420 Gene3D Phosphorylase Kinase; domain 1 63 172 - -
Prci6g0252 420 ProSiteProfiles Protein kinase domain profile. 87 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci6g0252 420 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 173 385 - -
Prci6g0252 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Prci6g0252 420 Gene3D Transferase(Phosphotransferase) domain 1 173 390 - -
Prci6g0252 420 FunFam Serine/threonine-protein kinase BIK1 54 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0252 Prci-Chr6 1466734 1469504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0252 65 372 Glycoside Hydrolase AT3G07070 46.278 4.52e-97 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Prci6g0252 PK_Tyr_Ser-Thr 4.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0252 - - qsu:111987244 605.134