Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0233 ATGATGAACTCCGATGCAGCTTCCCCTCCGACCTCCTACTGGTGCTACAGCTGCACCCGCTTTGTTCGCCTCTTGGATCGGGACGATGTCGCTTGCCCTCACTGCCAAAGCGGCTTCGTTGAAGAGATCCACAACCACCCTTCCTCCGATCATCATCACCTCAGCCCCTTTCCTCCTTCTACCTTCCCCGATTCAGCTCCTACTTCCTACGATTTCAGCAGACAAGGGTTCCGTCGAAGGCGACGCAACGCCGGCAACAGATCTCCCTTTAACCCTGTAATTGTCCTCCGTGGACCCGTCGACGGAACCGCTGGCCACAACGGTGTCGGTAGTGACCAGGAAGAGAGCAGCTTCGAGTTGTACTACGATGACGGAGATGGCTCCGGCCTCCGACCGTTGCCGCCGGCCATGTCTGAGTTCCTGTTAGGGTCAGGGTTTGAACGGCTTCTGGAGCAGTTTTCCCAGATCGAACTGAATGGGTTCGGGCGTCCAGAGAACCCGCCCGCTTCCAAAGCAGCCATAGAGTCGATGCCTGCGATTGTTATTGAGGAGACCCATGTGGGTTCCGATGCGCACTGTGCCGTGTGCAAGGAAGCGTTCGAACTCGGTACGGAGGCGCGTGAAATGCCCTGCAAGCATATATACCATTCAGATTGCATCCTTCCGTGGCTTTCAATGCGCAATTCATGCCCTGTGTGCCGCCACGAGCTGCCGTCGGATCGAAACACGTTAGACAGTAGAGTGTCGGGTCAAATCGATGACGAAACAGTAGGATTGACGATTTGGCGGCTGCCTGGTGGGGGCTTCGCGGTTGGAAGGTTTTCCGGCAGTCGGAGAGCCGGCGAGAGTCATTTCCCTGTCGTGTACACGGAAATGGACGGTGCACTGAATACAAATGGAGCCCCGAGAACAGTTTCCCGAACAGCGAGAAGCACCAGAGTCAGAGAAAGTCGCGGCTTTGGAAGAATTGTTCGCAATTTCTTGTCAATCTTCGGGGGGCGTCGGTCAAGGTCAAGTCCATCTTCATCTCCTGGTTCCGAGCGCGAGCCTCCGAGCATGAGTCGGAGCCATTCGATCTCATTATTCGGGAGAAACTCGAGGAGGCGCAGTAGAACTTGGGTTTTGGAAGATTGA 1134 0.5564 MMNSDAASPPTSYWCYSCTRFVRLLDRDDVACPHCQSGFVEEIHNHPSSDHHHLSPFPPSTFPDSAPTSYDFSRQGFRRRRRNAGNRSPFNPVIVLRGPVDGTAGHNGVGSDQEESSFELYYDDGDGSGLRPLPPAMSEFLLGSGFERLLEQFSQIELNGFGRPENPPASKAAIESMPAIVIEETHVGSDAHCAVCKEAFELGTEAREMPCKHIYHSDCILPWLSMRNSCPVCRHELPSDRNTLDSRVSGQIDDETVGLTIWRLPGGGFAVGRFSGSRRAGESHFPVVYTEMDGALNTNGAPRTVSRTARSTRVRESRGFGRIVRNFLSIFGGRRSRSSPSSSPGSEREPPSMSRSHSISLFGRNSRRRSRTWVLED 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0233 377 MobiDBLite consensus disorder prediction 334 377 - -
Prci6g0233 377 SMART ring_2 193 233 IPR001841 -
Prci6g0233 377 Pfam Ring finger domain 192 234 IPR001841 -
Prci6g0233 377 MobiDBLite consensus disorder prediction 334 367 - -
Prci6g0233 377 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 67 238 - -
Prci6g0233 377 MobiDBLite consensus disorder prediction 46 72 - -
Prci6g0233 377 Pfam Protein of unknown function (DUF1117) 257 367 IPR010543 -
Prci6g0233 377 SUPERFAMILY RING/U-box 173 243 - -
Prci6g0233 377 FunFam E3 ubiquitin-protein ligase RING1-like 155 240 - -
Prci6g0233 377 CDD RING-H2_RNF126-like 193 234 - -
Prci6g0233 377 ProSiteProfiles Zinc finger RING-type profile. 193 234 IPR001841 -
Prci6g0233 377 Pfam zinc-ribbon 11 43 IPR039525 GO:0061630
Prci6g0233 377 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 160 240 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0233 Prci-Chr6 1336050 1337641 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0233 132 240 C3H Transcription Factor Family AT5G01980 44.037 5.10e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0233 K11982 - gmx:100792874 480.33