Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0199 ATGAGGAAGCCCGAGTCTGGAAAAAACAACAACAATAACAAGCTTAGGAAGGGGCTGTGGTCACCGGAAGAAGATGACAAGCTCATGAACTACATGCTAAACAATGGACAAGGTTGTTGGAGTGATGTCGCCAGGAACGCTGGCTTGCAAAGATGTGGCAAAAGTTGTCGCCTTCGCTGGATCAATTACTTGAGGCCTGATCTCAAACGTGGTGCTTTCTCTCCCCAGGAGGAACAGCTTATCATCCATCTGCATTCCCTTCTTGGCAACAGATGGTCCCAAATAGCGGCGCGCTTGCCCGGGCGAACCGACAACGAAATCAAGAATTTCTGGAACTCCACAATAAAGAAAAGGCTCAAGCTCATGTCATCCACCACCACCGGCTCACAAAATGCAAGCGAGTCCTCTTCCATATTATCTGAGCCTAATATCAAAGACCTCAACAATGTCATGGGAGGTTTCATGCCTATGTTCAACAATAACATAATTGAGAGATTGCCTATGATTGAGAATGGACTAAACGCGCAAGTAGCTTCTGACGGATTCTTCAACAGCAATGGAGGGCCTTGCTTCCCACAAAACGGAGCTGACCCTAACATCAATAATGGTTTCTACGTAGAAAATGGAGTCTTCGGGATTGGGAGTGTAAATATTGGAGCAGAAGGGGAGCTGTTTGTGCCTCCTCTGGAGAGTGTTAATAACCCTATAACTGATAACCTGCAGAAACTGGAGAATAGAGACACTAACGTTAATAGTTACTTCGATAACATAAACAGCATCGTTAATAACTGCAACAATAATAGAGGTGGGGTGGAGGATCTATTTCAGGAAGAGTTAACCTTGGGAGAGTGGGACTTAGAGGACTTGATGAAAGATGTTTCATCCTTTCCCTTTCTTGATTTTTCAAGCTGA 912 0.4474 MRKPESGKNNNNNKLRKGLWSPEEDDKLMNYMLNNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEQLIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKLMSSTTTGSQNASESSSILSEPNIKDLNNVMGGFMPMFNNNIIERLPMIENGLNAQVASDGFFNSNGGPCFPQNGADPNINNGFYVENGVFGIGSVNIGAEGELFVPPLESVNNPITDNLQKLENRDTNVNSYFDNINSIVNNCNNNRGGVEDLFQEELTLGEWDLEDLMKDVSSFPFLDFSS 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0199 303 CDD SANT 72 112 IPR001005 -
Prci6g0199 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Prci6g0199 303 SUPERFAMILY Homeodomain-like 15 111 IPR009057 -
Prci6g0199 303 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Prci6g0199 303 Gene3D - 71 140 - -
Prci6g0199 303 FunFam Transcription factor MYB46 71 143 - -
Prci6g0199 303 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Prci6g0199 303 FunFam MYB transcription factor 14 70 - -
Prci6g0199 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 64 IPR017930 -
Prci6g0199 303 CDD SANT 20 64 IPR001005 -
Prci6g0199 303 Pfam Myb-like DNA-binding domain 70 113 IPR001005 -
Prci6g0199 303 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Prci6g0199 303 PANTHER MYB DOMAIN PROTEIN 55 10 143 - -
Prci6g0199 303 Gene3D - 14 70 - -
Prci6g0199 303 SMART sant 16 66 IPR001005 -
Prci6g0199 303 SMART sant 69 117 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0199 Prci-Chr6 1093296 1095599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0199 1 298 MYB Transcription Factor Family AT5G12870 48.718 3.64e-79 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci6g0199 Myb_DNA-binding 3.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0199 K09422 - gmx:100785810 393.275