Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0179 ATGGGCTCAATGAACTCAAACAACTGGCTTTCCTTCCCTCTTTCCCCTACTCAGTCTTCCCTACCTCCACAACTCCAAGCCTCTCAATCCCATCAGTTTTCTCTTGGCTTAGTCAATGATTCCATGGAAAACCCATTCCAAAACCACGATTGGAATCTGATGAATACACACGGCAGCAATGTCAATGAAGTTCCGAAGGTAGCAGATTTTCTAGGAGTGGGGAAGTCTGAGAATCAGTCGGATCTTACAGCCTTTAATGAAATTCAGTCAAATGATTCGGGTTACCTATTCACAAACAGCAGTCTGGTGCCGATGCAAAGCTCAGTGGTGGCCACATCTGGGAACTTCGAGTATCAAGAAAACAATGCTAACACTAACCTGCAGTCTTTGACATTATCCATGGGTAGCGGCAAGGATTCTACCTGTGAAACTAGTGGTGACAATAGTACTAATACTGCTGTCGAAGCTGCTGCGCCTAGAAGAACTTTAGATACATTCGGTCAGAGAACATCAATCTATCGAGGTGTAACCAGACATAGATGGACCGGAAGGTACGAGGCTCATCTTTGGGATAATAGTTGTAGAAGGGAAGGACAATCACGAAAGGGACGCCAAGTATATTTGGGTGGGTATGACAAAGAAGAGAAAGCAGCTAGGGCCTATGATTTAGCGGCACTAAAGTACTGGGGAACATCCACAACTACCAACTTTCCAATCAGTAACTATGAGAAGGAATTGGAGGACATGAAACACATGACAAGACAAGAATTTGTGGCCGCCATACGAAGGAAGAGCAGTGGGTTCTCTAGGGGTGCGTCAATGTATCGCGGTGTCACCAGGCATCACCAACACGGTAGATGGCAGGCAAGGATCGGTAGAGTTGCGGGAAACAAAGATCTTTACTTGGGAACTTTCAGTACTGAGGAAGAAGCTGCAGAAGCATACGACATAGCGGCGATCAAGTTCAGAGGGCTAAACGCAGTGACAAACTTCGACATGAGCCGGTACGACGTGAAAGCCATACTTGAAAGCAACACGCTTCCAATCGGAGGAGGAGCTGCAAAACGACTGAAGGAAGCTCAAGCTCTGGAATGTTCGAGAAAAAGAGAGGAAATGATAGCACTGGGATCGAGCTTTCAATACGGCAGCGGCAGCGGAAGCAGCTCTAGCAGGCTGCAACTACAAGCCTACCCACTGATGCAGTTGGATCAGACGCAGCCATTGTTAAGCCTGCAGAACCAGGAGATATCTCAGTACTCGTCACTTCATCATCCCAGTTATATCCAGACCCAGCTTCAGTTGCACCACCAAACCGGTTCTTCCAGCTATAACTTTCACCAATCACCGAGCAACAACGCTCAATTGTACAATAGCTATCTTCAGAACCACCCGGCTCTGCTTCAGGGTTTGATGAACATGGGTTCTTGTTCTTCTTCTGTGATGGACAATGATGGAGGGTCTAGTGGGAGTTACAGTGGAGGAGGGTTTATGGGGATGGCTTCCAATACGACGTCGGGGGGATCTGCGGAGGAGCTGGCGCTGGTGAAGGTTGAGAATTACAACATGCCGTCTGGGGCTTACGGCGGCTGGCCGTCGGAGTCCATGCAGGGATCAAATGCTGCTCTCTTTACTATGTGGAATGACTGA 1647 0.4797 MGSMNSNNWLSFPLSPTQSSLPPQLQASQSHQFSLGLVNDSMENPFQNHDWNLMNTHGSNVNEVPKVADFLGVGKSENQSDLTAFNEIQSNDSGYLFTNSSLVPMQSSVVATSGNFEYQENNANTNLQSLTLSMGSGKDSTCETSGDNSTNTAVEAAAPRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKELEDMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGGAAKRLKEAQALECSRKREEMIALGSSFQYGSGSGSSSSRLQLQAYPLMQLDQTQPLLSLQNQEISQYSSLHHPSYIQTQLQLHHQTGSSSYNFHQSPSNNAQLYNSYLQNHPALLQGLMNMGSCSSSVMDNDGGSSGSYSGGGFMGMASNTTSGGSAEELALVKVENYNMPSGAYGGWPSESMQGSNAALFTMWND 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0179 548 ProSiteProfiles AP2/ERF domain profile. 274 332 IPR001471 GO:0003700|GO:0006355
Prci6g0179 548 SMART rav1_2 172 244 IPR001471 GO:0003700|GO:0006355
Prci6g0179 548 SMART rav1_2 274 338 IPR001471 GO:0003700|GO:0006355
Prci6g0179 548 PRINTS Ethylene responsive element binding protein signature 173 184 IPR001471 GO:0003700|GO:0006355
Prci6g0179 548 PRINTS Ethylene responsive element binding protein signature 314 334 IPR001471 GO:0003700|GO:0006355
Prci6g0179 548 FunFam AP2-like ethylene-responsive transcription factor 273 334 - -
Prci6g0179 548 ProSiteProfiles AP2/ERF domain profile. 172 238 IPR001471 GO:0003700|GO:0006355
Prci6g0179 548 SUPERFAMILY DNA-binding domain 273 334 IPR016177 GO:0003677
Prci6g0179 548 Pfam AP2 domain 172 230 IPR001471 GO:0003700|GO:0006355
Prci6g0179 548 Pfam AP2 domain 275 324 IPR001471 GO:0003700|GO:0006355
Prci6g0179 548 CDD AP2 273 334 IPR001471 GO:0003700|GO:0006355
Prci6g0179 548 CDD AP2 171 240 IPR001471 GO:0003700|GO:0006355
Prci6g0179 548 FunFam AP2-like ethylene-responsive transcription factor ANT 171 240 - -
Prci6g0179 548 Gene3D AP2/ERF domain 274 334 IPR036955 GO:0003700|GO:0006355
Prci6g0179 548 Gene3D AP2/ERF domain 172 240 IPR036955 GO:0003700|GO:0006355
Prci6g0179 548 SUPERFAMILY DNA-binding domain 171 240 IPR016177 GO:0003677
Prci6g0179 548 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 70 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0179 Prci-Chr6 1020160 1023690 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0179 4 548 AP2-EREBP Transcription Factor Family AT3G20840 65.042 0.0 667
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Prci6g0179 AP2 9.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0179 K09285 - pvy:116115844 810.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci6g0179 6 1020160 1023690 Prci6g0179 6 1020160 1023690 ECH