Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0173 ATGGAGTCAGATCTTGAGCACCGCTCTTCAATGTTACATGGTCATCAGCAGCAGCAGCAGATGAATTCTGGTTTGACACGGTACAGATCGGCTCCGAGCTCATATTTCACGAATGTCATAGACAAGGAATTCTATGAGGACGTGTTCAATCGGCCTTCCAGCCCCGAAACAGAGCGAATTTTTTCACGGTTTATGAATAGCCTTGCTAATGAGTCAGAAGATGCACCGGCTCAATATCTTTCATCTGCTCGACAAAATTCTGCTGTGAAGGAAGAGATGGATCAGCAGCCTCAGGTTATGCCTTCCGTGAACAATGAAATGGAGGCTTTCGAGCTGCAGCAGCAGCAGAACAGTATTAATAATTTTGTATCTGCTCCGCAGAATCTTTTCCAAAGCTCAGGGCGTCCACCTTTGCCGAATCAGACCCTGACTTCTTCAGCTATGGAAGGAGTCTATTCGAGGGCAAGTCATCGATTGTCACATATGAAGGCTCCCGATGCAAATAATTCCAATCTAATCAGGCACAATAGCTCACCCGCTGGACTCTTTTCCACCATAAACATTGAAAGCTTTGCTACTATGAGAGGCGCAGGCATATTGGGATCTGGTAATAACACAAGCGAAGAAGCGAACTTCTCTTCAGCGATGAGGATGAAAAATCCGCCAAAATACTCGAAAGGCTTAATGTCTTCCATAGCTGAAGTTGGGGGCAAAGGCAACACAGATCATATTCAAGACACTGAATCTTTTGCTGAAAGTCAAGATAATGAGTTTATCACAGGTTTCCCCCCAGGTCCTTGGAACGATTCTGCACTCATGTCTGACAATACTGCTGGACTAAAAAGATTTAGAGACGAGGATGCAAAAACATTTTCTGAGACTCAGAACGAGGCAGCCAGCCAGCCTGGTCCTGCTCCTCTGGCTCATCACCTCAGCTTGCCAAAAACTTCAGCTGAAATGGCAGCCATTGAAAAGTTTCTGCAGTTCTCAGATTCTGTTCCCTGTAAAATTCGTGCTAAGAGGGGGTGTGCGACTCACCCGAGAAGCATCGCAGAGAGGGTTAGAAGAACTAAGATCAGTGAGCGCATGAGGAAACTACAAGATCTGGTCCCCAACATGGACAAACAAACAAACACAGCAGACATGTTGGACTTGGCTGTCGACTACATTAAAGACCTTCAAAAGCAGGTTCAGACGCTTTCAGACAGTAATGCAAAGTGCACGTGTCCACACAAGCAGAGGCAGTGA 1248 0.4599 MESDLEHRSSMLHGHQQQQQMNSGLTRYRSAPSSYFTNVIDKEFYEDVFNRPSSPETERIFSRFMNSLANESEDAPAQYLSSARQNSAVKEEMDQQPQVMPSVNNEMEAFELQQQQNSINNFVSAPQNLFQSSGRPPLPNQTLTSSAMEGVYSRASHRLSHMKAPDANNSNLIRHNSSPAGLFSTINIESFATMRGAGILGSGNNTSEEANFSSAMRMKNPPKYSKGLMSSIAEVGGKGNTDHIQDTESFAESQDNEFITGFPPGPWNDSALMSDNTAGLKRFRDEDAKTFSETQNEAASQPGPAPLAHHLSLPKTSAEMAAIEKFLQFSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKDLQKQVQTLSDSNAKCTCPHKQRQ 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0173 415 FunFam Transcription factor bHLH130 family 344 413 - -
Prci6g0173 415 Gene3D - 344 414 IPR036638 GO:0046983
Prci6g0173 415 SMART finulus 349 399 IPR011598 GO:0046983
Prci6g0173 415 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 346 408 IPR036638 GO:0046983
Prci6g0173 415 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 75 409 - -
Prci6g0173 415 MobiDBLite consensus disorder prediction 289 309 - -
Prci6g0173 415 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 343 393 IPR011598 GO:0046983
Prci6g0173 415 Pfam Helix-loop-helix DNA-binding domain 348 394 IPR011598 GO:0046983
Prci6g0173 415 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0173 Prci-Chr6 963673 967768 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0173 1 409 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 40.559 1.73e-79 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci6g0173 HLH 5.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0173 - - qsa:O6P43_028130 523.087