Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0171 ATGGAGTCAGATCTTGAGCACCGCTCTTCAATGTTACATGGTCATCAGCAGCAGCAGCAGATGAATTCTGGTTTGACACGGTACAGATCGGCTCCGAGCTCATATTTCACGAATGTCATAGACAAGGAATTCTATGAGGACGTGTTCAATCGGCCTTCCAGCCCCGAAACAGAGCGAATTTTTTCACGGTTTATGAATAGCCTTGCTAATGAGTCAGAAGATGCACCGGCTCAATATCTTTCATCTGCTCGACAAAATTCTGCTGTGAAGGAAGAGATGGATCAGCAGCCTCAGAATCTTTTCCAAAGCTCAGGGCGTCCACCTTTGCCGAATCAGACCCTGACTTCTTCAGCTATGGAAGGAGTCTATTCGAGGGCAAGTCATCGATTGTCACATATGAAGGCTCCCGATGCAAATAATTCCAATCTAATCAGGCACAATAGCTCACCCGCTGGACTCTTTTCCACCATAAACATTGAAAGCTTTGCTACTATGAGAGGCGCAGGCATATTGGGATCTGGTAATAACACAAGCGAAGAAGCGAACTTCTCTTCAGCGATGAGGATGAAAAATCCGCCAAAATACTCGAAAGGCTTAATGTCTTCCATAGCTGAAGTTGGGGGCAAAGGCAACACAGATCATATTCAAGACACTGAATCTTTTGCTGAAAGTCAAGATAATGAGTTTATCACAGGTTTCCCCCCAGGTCCTTGGAACGATTCTGCACTCATGTCTGACAATACTGCTGGACTAAAAAGATTTAGAGACGAGGATGCAAAAACATTTTCTGAGACTCAGAACGAGGCAGCCAGCCAGCCTGGTCCTGCTCCTCTGGCTCATCACCTCAGCTTGCCAAAAACTTCAGCTGAAATGGCAGCCATTGAAAAGTTTCTGCAGTTCTCAGATTCTGTTCCCTGTAAAATTCGTGCTAAGAGGGGGTGTGCGACTCACCCGAGAAGCATCGCAGAGAGGGTTAGAAGAACTAAGATCAGTGAGCGCATGAGGAAACTACAAGATCTGGTCCCCAACATGGACAAACAAACAAACACAGCAGACATGTTGGACTTGGCTGTCGACTACATTAAAGACCTTCAAAAGCAGGTTCAGACGCTTTCAGACAGTAATGCAAAGTGCACGTGTCCACACAAGCAGAGGCAGTGA 1161 0.4608 MESDLEHRSSMLHGHQQQQQMNSGLTRYRSAPSSYFTNVIDKEFYEDVFNRPSSPETERIFSRFMNSLANESEDAPAQYLSSARQNSAVKEEMDQQPQNLFQSSGRPPLPNQTLTSSAMEGVYSRASHRLSHMKAPDANNSNLIRHNSSPAGLFSTINIESFATMRGAGILGSGNNTSEEANFSSAMRMKNPPKYSKGLMSSIAEVGGKGNTDHIQDTESFAESQDNEFITGFPPGPWNDSALMSDNTAGLKRFRDEDAKTFSETQNEAASQPGPAPLAHHLSLPKTSAEMAAIEKFLQFSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKDLQKQVQTLSDSNAKCTCPHKQRQ 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0171 386 SMART finulus 320 370 IPR011598 GO:0046983
Prci6g0171 386 MobiDBLite consensus disorder prediction 260 281 - -
Prci6g0171 386 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 317 379 IPR036638 GO:0046983
Prci6g0171 386 FunFam Transcription factor bHLH130 family 315 384 - -
Prci6g0171 386 MobiDBLite consensus disorder prediction 75 110 - -
Prci6g0171 386 Gene3D - 315 385 IPR036638 GO:0046983
Prci6g0171 386 Pfam Helix-loop-helix DNA-binding domain 319 365 IPR011598 GO:0046983
Prci6g0171 386 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 314 364 IPR011598 GO:0046983
Prci6g0171 386 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 75 380 - -
Prci6g0171 386 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0171 Prci-Chr6 963673 967772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0171 1 380 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 41.627 3.38e-81 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci6g0171 HLH 4.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0171 - - qsa:O6P43_028130 483.026