Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0142 ATGGACTCCGAGGATGATATGCATGATGCCAACGATGTTGAGTCCCTTGATGATGATTTCTACAGCGGTGAGACCGAGGATGTCCCTATGGATTATTACAGCGACTACGATGATGATGCTGATGATTACTTTGATGATGGCGATGAATCTGACAAGATTGAGTCTCGTCGCCCCGAGCAAAATTTTACCATCTTGCGGGAATCAGATATTCGGCAAAGGCAAGAGGATGACATAACAAGAGTAGCGACGGTTCTTTTTATCTCGCCAGTGGCTGCAAGCATCTTACTTCGTCACTATAATTGGAATGTTAGTGAAGTGCATGAAGCATGGTTTGCTAATGAAGAACATGTCCGTCGAACAGTTGGCTTACTGGAGAAGCCAGCTGTCCAGTTCCCCAACGCTAGGGAGCTTACTTGTGGCATCTGTTTTGAAACTTATCCTCCTTCACGGATTGAATCTGCTGCTTGTGGTCATCCCTTCTGCATCTCATGCTGGGAAGGATATATTGGCACGGCTATCAATGATGGTCCTGGATGTTTAATGCTGCGGTGTCCTGATCCCTCTTGTGGTGCTGCTATTGGTCAAGATATGATTAATCTATTAGCATCTGTTGAGGATAAGCAGAAGTATTCTCGCTACCTTCTTAGGTCCTATATTGAAGACAACAAGAAGACCAAATGGTGTCCTGCGCCAGGTTGTGAATATGCGGTCACATTTGATGCTGGTAGTGGAAACTATGATGTTTCTTGCCTCTGTTCTTATTGCTTCTGCTGGAATTGCACTGAGGAGGCTCATCGTCCTGTGGACTGTGGCACTGTGGCCAAGTGGATTTTGAAGAATAGTGCAGAGTCTGAGAACATGAACTGGATTCTTGCCAACTCCAAGCCCTGTCCCAAGTGCAAGCGACCAATTGAGAAAAACCAAGGGTGCATGCATATGACATGCACACCCCCTTGTAAATTTGAATTTTGCTGGCTATGCCTTGGTGCATGGTCAGACCATGGTGAAAGAACTGGGGGTTTCTATGCTTGCAATCGTTATGAGGCAGCTAAACAAGAAGGAGTGTATGATGAAGCTGAAAGAAGAAGAGAGATGGCAAAGAACTCATTGGAGAGATACACACATTATTATGAGCGGTGGGCCAGCAACCAATCATCAAGGCAAAAAGCTCTTGCAGATCTACATCAGATGCAAACTGTCCATCTTGAGAAGCTTAGCGACACACAGTGCCAACCTGAGTCACAGCTTAAGTTCATAACCGAGGCCTGGCTACAGATAGTTGAATGCAGGCGAGTGCTGAAGTGGACGTATGCATATGGTTATTATTTACCAGAGCATGAGCATGCTAAAAAACAATTTTTTGAGTACTTACAAGAATCCGGTTTGGAGAGACTTCATCAATGCGCTGAAAAGGAATTACAGCAGTATCTCAATGCTGATGGCCCATCTAAAGAGTTCAATGACTTCCGGACCAAGCTAGCCGGATTGACCAGTGTGACTAAAAACTACTTCGAGAATTTGGTTAGGGCATTAGAGAATGGTTTATCTGACGTAGATAGTAATGGAGCTACTTCCAGCAAAGCAGCGGGCTCAAAAAATGCTGCAAGCAGCAGCAAGGGGAGAGGTGGAAGAGGAAAAGGAACTGCACGAATCAGCGTTTCCAATTCCAATAAAATGACGGATGATTCTAATTGGCATTGTGAGCACTGTACCTATGCAAATACTATGTCCGTTAACACATGCCAGATGTGTCATCAACAGCGTCGATGA 1770 0.4492 MDSEDDMHDANDVESLDDDFYSGETEDVPMDYYSDYDDDADDYFDDGDESDKIESRRPEQNFTILRESDIRQRQEDDITRVATVLFISPVAASILLRHYNWNVSEVHEAWFANEEHVRRTVGLLEKPAVQFPNARELTCGICFETYPPSRIESAACGHPFCISCWEGYIGTAINDGPGCLMLRCPDPSCGAAIGQDMINLLASVEDKQKYSRYLLRSYIEDNKKTKWCPAPGCEYAVTFDAGSGNYDVSCLCSYCFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDEAERRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVHLEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHEHAKKQFFEYLQESGLERLHQCAEKELQQYLNADGPSKEFNDFRTKLAGLTSVTKNYFENLVRALENGLSDVDSNGATSSKAAGSKNAASSSKGRGGRGKGTARISVSNSNKMTDDSNWHCEHCTYANTMSVNTCQMCHQQRR 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0142 589 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 69 436 IPR031127 GO:0004842|GO:0016567
Prci6g0142 589 ProSiteProfiles TRIAD supradomain profile. 135 348 IPR044066 -
Prci6g0142 589 MobiDBLite consensus disorder prediction 1 54 - -
Prci6g0142 589 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 219 IPR013083 -
Prci6g0142 589 CDD Rcat_RBR_ARI7-like 293 347 - -
Prci6g0142 589 ProSiteProfiles Zinc finger RING-type profile. 139 183 IPR001841 -
Prci6g0142 589 SMART ibrneu5 274 344 IPR002867 GO:0008270
Prci6g0142 589 SMART ibrneu5 208 270 IPR002867 GO:0008270
Prci6g0142 589 MobiDBLite consensus disorder prediction 1 48 - -
Prci6g0142 589 Pfam Ariadne domain 357 516 IPR045840 -
Prci6g0142 589 MobiDBLite consensus disorder prediction 519 561 - -
Prci6g0142 589 SUPERFAMILY RING/U-box 209 277 - -
Prci6g0142 589 ProSiteProfiles Zinc finger RanBP2 type profile. 561 589 IPR001876 -
Prci6g0142 589 Gene3D - 558 589 - -
Prci6g0142 589 ProSitePatterns Zinc finger RanBP2-type signature. 565 584 IPR001876 -
Prci6g0142 589 Coils Coil 349 376 - -
Prci6g0142 589 CDD BRcat_RBR_ANKIB1 215 279 - -
Prci6g0142 589 MobiDBLite consensus disorder prediction 519 538 - -
Prci6g0142 589 FunFam RBR-type E3 ubiquitin transferase 133 222 - -
Prci6g0142 589 SUPERFAMILY RING/U-box 289 337 - -
Prci6g0142 589 CDD RING-HC_ARI6-like 136 197 - -
Prci6g0142 589 FunFam RBR-type E3 ubiquitin transferase 271 518 - -
Prci6g0142 589 Gene3D - 266 518 - -
Prci6g0142 589 SUPERFAMILY RING/U-box 135 220 - -
Prci6g0142 589 Pfam IBR domain, a half RING-finger domain 208 270 IPR002867 GO:0008270
Prci6g0142 589 Pfam IBR domain, a half RING-finger domain 287 335 IPR002867 GO:0008270
Prci6g0142 589 SUPERFAMILY Ran binding protein zinc finger-like 561 588 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0142 Prci-Chr6 781179 788228 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0142 17 588 ARIADNE family AT1G65430 70.466 0.0 830
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0142 K11968 - gmx:100810427 1060.06