Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0139 ATGGACTCCGAAGATGATATGCATGATGCCAACGATATCGAATCCCTAGATGATGATTTCTACAGCGGTGAGACGGAGGACGTTCCTTTGGATTTCTACAGCGACTACGATGATGATGCTGATGATTACTTTGACGATGGTGATGAATCTGACAAGATCGAGGCTCGTCGCCCCGAGCAAAATTTCACCATCTTGAAGGAGTCAGATATTCAGCAAAGACAGGAGGATGATGTCACTAGAGTAGCGACCGTTCTTTTTATCTCACGTGTTGATGCAGCTATTTTACTTCGTCACTATAATTGGAATGTCAGCGAAGTGCAGGAAGCATGGTTTGCTAATGTAGAGCATGTCCGAAGAACAGTTGGGTTATTGGAGAAGCCAGTTGTCCAGTTTCCTAATGCTAGAGAGCTTACTTGTGGCATTTGTTTTGAAACCTATCCTTGTTCACGGATTGAGTCTGCTGCTTGTGGTCATCCCTATTGCATCTCATGTTGGGAAGGGTATATTGGCACGGCTATTAATGATGGTCCTGGATGTTTGATGCTGCGGTGTCCTGATACCTCTTGTGGTGCAGCTGTTGGTCAAAATATGATTAATCTATTGGCACCTGATGAAGATAAGCAGAAGTATTTTCGTTACCTTCATAGGTCCTATGTTGAAGACAACAAGAAGACCAAGTGGTGCCCTGCTCCTGGATGTGAATATGCAGTTACATTTGATGCTGGTGGTGGAAATTATGATGTTTCTTGCCTCTGTTCTTATTGCTTCTGCTGGAATTGCACTGAGGAGGCTCACCGTCCTGTGGATTGTGGCACTGTGGCAAAGTGGATTTTGAAGAATAGTGCAGAGTCTGAGAACATGAACTGGGTACTTGCCAACTCAAAGCCCTGTCCCAAGTGCAAGAGACCAATTGAAAAAAACCAAGGGTGCATGCACATGACCTGTACACCCCCATGTAAATTTGAATTTTGCTGGCTATGCCTTGGTGCATGGTCAGAGCATGGTGAAAGGACTGGTGGTTTCTATGCTTGCAATCGTTACGAGGCAGCTAAACAAGAGGGAGTGTGCATGCAGTATGACGAAGCTGAAAGAGGAAGACAAATGGCGAAGAATTTGTTAGAAAGATACACACATTATTATGAGCGGTGGGCCAGCAATCAATCTGTATGCAACACCAAACTTATTCGTTCGATGACAATATCTGAATATGCAGTCTTTAACATTCTAGGCAAAAAGCTCTTGCTGATCTACATCAGATGCAAACAGTCCATGCAACTTGAGAAGCTTCGTGACACACAGTGCCAACCTGAGTCACAGCTTAAGTTCATAACTGAGGCCTGGCTACAGATAGTTGAATGTAGGCGAGTGCTGAAGTGGACTTACGCTTATGGGTACTATTTACCGGAGCATGAGCATGCCAAAAAACAGCTTTTTGAGTACTTACAAGGTGAGGCAGAATCTGGTTTGGAGAGGCTTCATCAATGTGCTGAAAAGGAATTGCAGCAGTATCTCAATGCTGATGGCCCATCTAAAGAGTTTAATGACTTCCGAACAAAGCTAGCTGGACTGACCAGTGTGACTAGGAACTACTTCGAGAATTTGGTTAGGGCTTTAGAGAATGGTTTATCTGATGTGGATAGTAATGGAGTGGCTTCCAGCAAAGCAACGAGCTCAAAAAATGCTACTGGCAGCAGCAAGGGTAGAGGGGGAAGAGGAAAAGGAACCACTCGAACAAGCAGTTCCAACAAAATGACTGATGATAGTAATTGGTATTGTGGGCAATGTACCTATGCAAACAATATGTCTGTTAACACCTGCCAAATGTGCCATCAACAGCGGCGATAG 1845 0.4428 MDSEDDMHDANDIESLDDDFYSGETEDVPLDFYSDYDDDADDYFDDGDESDKIEARRPEQNFTILKESDIQQRQEDDVTRVATVLFISRVDAAILLRHYNWNVSEVQEAWFANVEHVRRTVGLLEKPVVQFPNARELTCGICFETYPCSRIESAACGHPYCISCWEGYIGTAINDGPGCLMLRCPDTSCGAAVGQNMINLLAPDEDKQKYFRYLHRSYVEDNKKTKWCPAPGCEYAVTFDAGGGNYDVSCLCSYCFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWVLANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSEHGERTGGFYACNRYEAAKQEGVCMQYDEAERGRQMAKNLLERYTHYYERWASNQSVCNTKLIRSMTISEYAVFNILGKKLLLIYIRCKQSMQLEKLRDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHEHAKKQLFEYLQGEAESGLERLHQCAEKELQQYLNADGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVDSNGVASSKATSSKNATGSSKGRGGRGKGTTRTSSSNKMTDDSNWYCGQCTYANNMSVNTCQMCHQQRR 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0139 614 Gene3D - 583 614 - -
Prci6g0139 614 ProSiteProfiles Zinc finger RING-type profile. 139 183 IPR001841 -
Prci6g0139 614 SMART ibrneu5 274 344 IPR002867 GO:0008270
Prci6g0139 614 SMART ibrneu5 208 270 IPR002867 GO:0008270
Prci6g0139 614 SUPERFAMILY RING/U-box 289 337 - -
Prci6g0139 614 FunFam RBR-type E3 ubiquitin transferase 271 545 - -
Prci6g0139 614 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 223 IPR013083 -
Prci6g0139 614 ProSiteProfiles TRIAD supradomain profile. 135 348 IPR044066 -
Prci6g0139 614 MobiDBLite consensus disorder prediction 546 584 - -
Prci6g0139 614 FunFam RBR-type E3 ubiquitin transferase 133 222 - -
Prci6g0139 614 SUPERFAMILY Ran binding protein zinc finger-like 586 613 IPR036443 -
Prci6g0139 614 SUPERFAMILY RING/U-box 135 217 - -
Prci6g0139 614 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 69 460 IPR031127 GO:0004842|GO:0016567
Prci6g0139 614 ProSitePatterns Zinc finger RanBP2-type signature. 590 609 IPR001876 -
Prci6g0139 614 CDD Rcat_RBR_ARI7-like 293 347 - -
Prci6g0139 614 MobiDBLite consensus disorder prediction 1 33 - -
Prci6g0139 614 SUPERFAMILY RING/U-box 209 277 - -
Prci6g0139 614 Gene3D - 266 545 - -
Prci6g0139 614 CDD BRcat_RBR_ANKIB1 216 279 - -
Prci6g0139 614 Pfam IBR domain, a half RING-finger domain 287 334 IPR002867 GO:0008270
Prci6g0139 614 Pfam IBR domain, a half RING-finger domain 208 270 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0139 Prci-Chr6 771977 779326 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0139 17 613 ARIADNE family AT1G65430 65.620 0.0 787
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0139 K11968 - pcin:129313099 1221.84