Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0137 ATGGACTCCGAAGATGATATGCATGATGCCAACGATATCGAATCCCTAGATGATGATTTCTACAGCGGTGAGACGGAGGACGTTCCTTTGGATTTCTACAGCGACTACGATGATGATGCTGATGATTACTTTGACGATGGTGATGAATCTGACAAGATCGAGGCTCGTCGCCCCGAGCAAAATTTCACCATCTTGAAGGAGTCAGATATTCAGCAAAGACAGGAGGATGATGTCACTAGAGTAGCGACCGTTCTTTTTATCTCACGTGTTGATGCAGCTATTTTACTTCGTCACTATAATTGGAATGTCAGCGAAGTGCAGGAAGCATGGTTTGCTAATGTAGAGCATGTCCGAAGAACAGTTGGGTTATTGGAGAAGCCAGTTGTCCAGTTTCCTAATGCTAGAGAGCTTACTTGTGGCATTTGTTTTGAAACCTATCCTTGTTCACGGATTGAGTCTGCTGCTTGTGGTCATCCCTATTGCATCTCATGTTGGGAAGGGTATATTGGCACGGCTATTAATGATGGTCCTGGATGTTTGATGCTGCGGTGTCCTGATACCTCTTGTGGTGCAGCTGTTGGTCAAAATATGATTAATCTATTGGCACCTGATGAAGATAAGCAGAAGTATTTTCGTTACCTTCATAGGTCCTATGTTGAAGACAACAAGAAGACCAAGTGGTGCCCTGCTCCTGGATGTGAATATGCAGTTACATTTGATGCTGGTGGTGGAAATTATGATGTTTCTTGCCTCTGTTCTTATTGCTTCTGCTGGAATTGCACTGAGGAGGCTCACCGTCCTGTGGATTGTGGCACTGTGGCAAAGTGGATTTTGAAGAATAGTGCAGAGTCTGAGAACATGAACTGGGTACTTGCCAACTCAAAGCCCTGTCCCAAGTGCAAGAGACCAATTGAAAAAAACCAAGGGTGCATGCACATGACCTGTACACCCCCATGTAAATTTGAATTTTGCTGGCTATGCCTTGGTGCATGGTCAGAGCATGGTGAAAGGACTGGTGGTTTCTATGCTTGCAATCGTTACGAGGCAGCTAAACAAGAGGGAGTGTGCATGCAGTATGACGAAGCTGAAAGAGGAAGACAAATGGCGAAGAATTTGTTAGAAAGATACACACATTATTATGAGCGGTGGGCCAGCAATCAATCTTCTAGGCAAAAAGCTCTTGCTGATCTACATCAGATGCAAACAGTCCATATAGTTGAATGTAGGCGAGTGCTGAAGTGGACTTACGCTTATGGGTACTATTTACCGGAGCATGAGCATGCCAAAAAACAGCTTTTTGAGTACTTACAAGGTGAGGCAGAATCTGGTTTGGAGAGGCTTCATCAATGTGCTGAAAAGGAATTGCAGCAGTATCTCAATGCTGATGGCCCATCTAAAGAGTTTAATGACTTCCGAACAAAGCTAGCTGGACTGACCAGGCTGCAAGTGGTGTTTTGCTTTAGGTTCGATATTGGAGTTGGGGAAGGAAAAGGGAAGGGAAGTAGTCGATGGAAAACGAAAGAGAATGTGACTAGGAACTACTTCGAGAATTTGGTTAGGGCTTTAGAGAATGGTTTATCTGATGTGGATAGTAATGGAGTGGCTTCCAGCAAAGCAACGAGCTCAAAAAATGCTACTGGCAGCAGCAAGGGTAGAGGGGGAAGAGGAAAAGGAACCACTCGAACAAGCAGTTCCAACAAAATGACTGATGATAGTAATTGGTATTGTGGGCAATGTACCTATGCAAACAATATGTCTGTTAACACCTGCCAAATGTGCCATCAACAGCGGCGATAG 1797 0.4441 MDSEDDMHDANDIESLDDDFYSGETEDVPLDFYSDYDDDADDYFDDGDESDKIEARRPEQNFTILKESDIQQRQEDDVTRVATVLFISRVDAAILLRHYNWNVSEVQEAWFANVEHVRRTVGLLEKPVVQFPNARELTCGICFETYPCSRIESAACGHPYCISCWEGYIGTAINDGPGCLMLRCPDTSCGAAVGQNMINLLAPDEDKQKYFRYLHRSYVEDNKKTKWCPAPGCEYAVTFDAGGGNYDVSCLCSYCFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWVLANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSEHGERTGGFYACNRYEAAKQEGVCMQYDEAERGRQMAKNLLERYTHYYERWASNQSSRQKALADLHQMQTVHIVECRRVLKWTYAYGYYLPEHEHAKKQLFEYLQGEAESGLERLHQCAEKELQQYLNADGPSKEFNDFRTKLAGLTRLQVVFCFRFDIGVGEGKGKGSSRWKTKENVTRNYFENLVRALENGLSDVDSNGVASSKATSSKNATGSSKGRGGRGKGTTRTSSSNKMTDDSNWYCGQCTYANNMSVNTCQMCHQQRR 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0137 598 ProSiteProfiles Zinc finger RING-type profile. 139 183 IPR001841 -
Prci6g0137 598 SMART ibrneu5 274 344 IPR002867 GO:0008270
Prci6g0137 598 SMART ibrneu5 208 270 IPR002867 GO:0008270
Prci6g0137 598 ProSitePatterns Zinc finger RanBP2-type signature. 574 593 IPR001876 -
Prci6g0137 598 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 223 IPR013083 -
Prci6g0137 598 SUPERFAMILY RING/U-box 209 277 - -
Prci6g0137 598 ProSiteProfiles TRIAD supradomain profile. 135 348 IPR044066 -
Prci6g0137 598 FunFam RBR-type E3 ubiquitin transferase 133 222 - -
Prci6g0137 598 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 69 415 IPR031127 GO:0004842|GO:0016567
Prci6g0137 598 MobiDBLite consensus disorder prediction 530 568 - -
Prci6g0137 598 Gene3D - 567 598 - -
Prci6g0137 598 Gene3D - 266 483 - -
Prci6g0137 598 CDD Rcat_RBR_ARI7-like 293 347 - -
Prci6g0137 598 SUPERFAMILY Ran binding protein zinc finger-like 570 597 IPR036443 -
Prci6g0137 598 MobiDBLite consensus disorder prediction 1 33 - -
Prci6g0137 598 SUPERFAMILY RING/U-box 135 217 - -
Prci6g0137 598 SUPERFAMILY RING/U-box 289 337 - -
Prci6g0137 598 Pfam IBR domain, a half RING-finger domain 208 270 IPR002867 GO:0008270
Prci6g0137 598 Pfam IBR domain, a half RING-finger domain 287 334 IPR002867 GO:0008270
Prci6g0137 598 CDD BRcat_RBR_ANKIB1 216 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0137 Prci-Chr6 771977 779328 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0137 17 597 ARIADNE family AT1G65430 62.806 0.0 746
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0137 K11968 - pcin:129313099 1157.13