Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0136 ATGGACTCCGAAGATGATATGCATGATGCCAACGATATCGAATCCCTAGATGATGATTTCTACAGCGGTGAGACGGAGGACGTTCCTTTGGATTTCTACAGCGACTACGATGATGATGCTGATGATTACTTTGACGATGGTGATGAATCTGACAAGATCGAGGCTCGTCGCCCCGAGCAAAATTTCACCATCTTGAAGGAGTCAGATATTCAGCAAAGACAGGAGGATGATGTCACTAGAGTAGCGACCGTTCTTTTTATCTCACGTGTTGATGCAGCTATTTTACTTCGTCACTATAATTGGAATGTCAGCGAAGTGCAGGAAGCATGGTTTGCTAATGTAGAGCATGTCCGAAGAACAGTTGGGTTATTGGAGAAGCCAGTTGTCCAGTTTCCTAATGCTAGAGAGCTTACTTGTGGCATTTGTTTTGAAACCTATCCTTGTTCACGGATTGAGTCTGCTGCTTGTGGTCATCCCTATTGCATCTCATGTTGGGAAGGGTATATTGGCACGGCTATTAATGATGGTCCTGGATGTTTGATGCTGCGGTGTCCTGATACCTCTTGTGGTGCAGCTGTTGGTCAAAATATGATTAATCTATTGGCACCTGATGAAGATAAGCAGAAGTATTTTCGTTACCTTCATAGGTCCTATGTTGAAGACAACAAGAAGACCAAGTGGTGCCCTGCTCCTGGATGTGAATATGCAGTTACATTTGATGCTGGTGGTGGAAATTATGATGTTTCTTGCCTCTGTTCTTATTGCTTCTGCTGGAATTGCACTGAGGAGGCTCACCGTCCTGTGGATTGTGGCACTGTGGCAAAGTGGATTTTGAAGAATAGTGCAGAGTCTGAGAACATGAACTGGGTACTTGCCAACTCAAAGCCCTGTCCCAAGTGCAAGAGACCAATTGAAAAAAACCAAGGGTGCATGCACATGACCTGTACACCCCCATGTAAATTTGAATTTTGCTGGCTATGCCTTGGTGCATGGTCAGAGCATGGTGAAAGGACTGGTGGTTTCTATGCTTGCAATCGTTACGAGGCAGCTAAACAAGAGGGAGTGTGCATGCAGTATGACGAAGCTGAAAGAGGAAGACAAATGGCGAAGAATTTGTTAGAAAGATACACACATTATTATGAGCGGTGGGCCAGCAATCAATCTATAGTTGAATGTAGGCGAGTGCTGAAGTGGACTTACGCTTATGGGTACTATTTACCGGAGCATGAGCATGCCAAAAAACAGCTTTTTGAGTACTTACAAGGTGAGGCAGAATCTGGTTTGGAGAGGCTTCATCAATGTGCTGAAAAGGAATTGCAGCAGTATCTCAATGCTGATGGCCCATCTAAAGAGTTTAATGACTTCCGAACAAAGCTAGCTGGACTGACCAGGCTGCAAGTGGTGTTTTGCTTTAGGTTCGATATTGGAGTTGGGGAAGGAAAAGGGAAGGGAAGTAGTCGATGGAAAACGAAAGAGAATGTGACTAGGAACTACTTCGAGAATTTGGTTAGGGCTTTAGAGAATGGTTTATCTGATGTGGATAGTAATGGAGTGGCTTCCAGCAAAGCAACGAGCTCAAAAAATGCTACTGGCAGCAGCAAGGGTAGAGGGGGAAGAGGAAAAGGAACCACTCGAACAAGCAGTTCCAACAAAATGACTGATGATAGTAATTGGTATTGTGGGCAATGTACCTATGCAAACAATATGTCTGTTAACACCTGCCAAATGTGCCATCAACAGCGGCGATAG 1749 0.4448 MDSEDDMHDANDIESLDDDFYSGETEDVPLDFYSDYDDDADDYFDDGDESDKIEARRPEQNFTILKESDIQQRQEDDVTRVATVLFISRVDAAILLRHYNWNVSEVQEAWFANVEHVRRTVGLLEKPVVQFPNARELTCGICFETYPCSRIESAACGHPYCISCWEGYIGTAINDGPGCLMLRCPDTSCGAAVGQNMINLLAPDEDKQKYFRYLHRSYVEDNKKTKWCPAPGCEYAVTFDAGGGNYDVSCLCSYCFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWVLANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSEHGERTGGFYACNRYEAAKQEGVCMQYDEAERGRQMAKNLLERYTHYYERWASNQSIVECRRVLKWTYAYGYYLPEHEHAKKQLFEYLQGEAESGLERLHQCAEKELQQYLNADGPSKEFNDFRTKLAGLTRLQVVFCFRFDIGVGEGKGKGSSRWKTKENVTRNYFENLVRALENGLSDVDSNGVASSKATSSKNATGSSKGRGGRGKGTTRTSSSNKMTDDSNWYCGQCTYANNMSVNTCQMCHQQRR 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0136 582 FunFam RBR-type E3 ubiquitin transferase 133 222 - -
Prci6g0136 582 ProSiteProfiles Zinc finger RING-type profile. 139 183 IPR001841 -
Prci6g0136 582 SMART ibrneu5 274 344 IPR002867 GO:0008270
Prci6g0136 582 SMART ibrneu5 208 270 IPR002867 GO:0008270
Prci6g0136 582 Pfam IBR domain, a half RING-finger domain 208 270 IPR002867 GO:0008270
Prci6g0136 582 Pfam IBR domain, a half RING-finger domain 287 334 IPR002867 GO:0008270
Prci6g0136 582 SUPERFAMILY RING/U-box 209 277 - -
Prci6g0136 582 SUPERFAMILY RING/U-box 135 217 - -
Prci6g0136 582 MobiDBLite consensus disorder prediction 514 552 - -
Prci6g0136 582 ProSiteProfiles TRIAD supradomain profile. 135 348 IPR044066 -
Prci6g0136 582 Gene3D - 266 387 - -
Prci6g0136 582 Gene3D - 388 469 - -
Prci6g0136 582 SUPERFAMILY Ran binding protein zinc finger-like 554 581 IPR036443 -
Prci6g0136 582 Gene3D - 551 582 - -
Prci6g0136 582 CDD Rcat_RBR_ARI7-like 293 347 - -
Prci6g0136 582 SUPERFAMILY RING/U-box 289 337 - -
Prci6g0136 582 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 219 IPR013083 -
Prci6g0136 582 MobiDBLite consensus disorder prediction 1 33 - -
Prci6g0136 582 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 71 399 IPR031127 GO:0004842|GO:0016567
Prci6g0136 582 ProSitePatterns Zinc finger RanBP2-type signature. 558 577 IPR001876 -
Prci6g0136 582 CDD BRcat_RBR_ANKIB1 216 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0136 Prci-Chr6 771977 779328 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0136 17 581 ARIADNE family AT1G65430 61.011 0.0 717
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0136 K11968 - pcin:129313099 1053.89