Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0135 ATGGACTCCGAAGATGATATGCATGATGCCAACGATATCGAATCCCTAGATGATGATTTCTACAGCGGTGAGACGGAGGACGTTCCTTTGGATTTCTACAGCGACTACGATGATGATGCTGATGATTACTTTGACGATGGTGATGAATCTGACAAGATCGAGGCTCGTCGCCCCGAGCAAAATTTCACCATCTTGAAGGAGTCAGATATTCAGCAAAGACAGGAGGATGATGTCACTAGAGTAGCGACCGTTCTTTTTATCTCACGTGTTGATGCAGCTATTTTACTTCGTCACTATAATTGGAATGTCAGCGAAGTGCAGGAAGCATGGTTTGCTAATGTAGAGCATGTCCGAAGAACAGTTGGGTTATTGGAGAAGCCAGTTGTCCAGTTTCCTAATGCTAGAGAGCTTACTTGTGGCATTTGTTTTGAAACCTATCCTTGTTCACGGATTGAGTCTGCTGCTTGTGGTCATCCCTATTGCATCTCATGTTGGGAAGGGTATATTGGCACGGCTATTAATGATGGTCCTGGATGTTTGATGCTGCGGTGTCCTGATACCTCTTGTGGTGCAGCTGTTGGTCAAAATATGATTAATCTATTGGCACCTGATGAAGATAAGCAGAAGTATTTTCGTTACCTTCATAGGTCCTATGTTGAAGACAACAAGAAGACCAAGTGGTGCCCTGCTCCTGGATGTGAATATGCAGTTACATTTGATGCTGGTGGTGGAAATTATGATGTTTCTTGCCTCTGTTCTTATTGCTTCTGCTGGAATTGCACTGAGGAGGCTCACCGTCCTGTGGATTGTGGCACTGTGGCAAAGTGGATTTTGAAGAATAGTGCAGAGTCTGAGAACATGAACTGGGTACTTGCCAACTCAAAGCCCTGTCCCAAGTGCAAGAGACCAATTGAAAAAAACCAAGGGTGCATGCACATGACCTGTACACCCCCATGTAAATTTGAATTTTGCTGGCTATGCCTTGGTGCATGGTCAGAGCATGGTGAAAGGACTGGTGGTTTCTATGCTTGCAATCGTTACGAGGCAGCTAAACAAGAGGGAGTGTATGACGAAGCTGAAAGAGGAAGACAAATGGCGAAGAATTTGTTAGAAAGATACACACATTATTATGAGCGGTGGGCCAGCAATCAATCTTCTAGGCAAAAAGCTCTTGCTGATCTACATCAGATGCAAACAGTCCATCTTGAGAAGCTTCGTGACACACAGTGCCAACCTGAGTCACAGCTTAAGTTCATAACTGAGGCCTGGCTACAGATAGTTGAATGTAGGCGAGTGCTGAAGTGGACTTACGCTTATGGGTACTATTTACCGGAGCATGAGCATGCCAAAAAACAGCTTTTTGAGTACTTACAAGGTGAGGCAGAATCTGGTTTGGAGAGGCTTCATCAATGTGCTGAAAAGGAATTGCAGCAGTATCTCAATGCTGATGGCCCATCTAAAGAGTTTAATGACTTCCGAACAAAGCTAGCTGGACTGACCAGGCTGCAAGTGGTGTTTTGCTTTAGGTTCGATATTGGAGTTGGGGAAGGAAAAGGGAAGGGAAGTAGTCGATGGAAAACGAAAGAGAATGTGACTAGGAACTACTTCGAGAATTTGGTTAGGGCTTTAGAGAATGGTTTATCTGATGTGGATAGTAATGGAGTGGCTTCCAGCAAAGCAACGAGCTCAAAAAATGCTACTGGCAGCAGCAAGGGTAGAGGGGGAAGAGGAAAAGGAACCACTCGAACAAGCAGTTCCAACAAAATGACTGATGATAGTAATTGGTATTGTGGGCAATGTACCTATGCAAACAATATGTCTGTTAACACCTGCCAAATGTGCCATCAACAGCGGCGATAG 1860 0.4457 MDSEDDMHDANDIESLDDDFYSGETEDVPLDFYSDYDDDADDYFDDGDESDKIEARRPEQNFTILKESDIQQRQEDDVTRVATVLFISRVDAAILLRHYNWNVSEVQEAWFANVEHVRRTVGLLEKPVVQFPNARELTCGICFETYPCSRIESAACGHPYCISCWEGYIGTAINDGPGCLMLRCPDTSCGAAVGQNMINLLAPDEDKQKYFRYLHRSYVEDNKKTKWCPAPGCEYAVTFDAGGGNYDVSCLCSYCFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWVLANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSEHGERTGGFYACNRYEAAKQEGVYDEAERGRQMAKNLLERYTHYYERWASNQSSRQKALADLHQMQTVHLEKLRDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHEHAKKQLFEYLQGEAESGLERLHQCAEKELQQYLNADGPSKEFNDFRTKLAGLTRLQVVFCFRFDIGVGEGKGKGSSRWKTKENVTRNYFENLVRALENGLSDVDSNGVASSKATSSKNATGSSKGRGGRGKGTTRTSSSNKMTDDSNWYCGQCTYANNMSVNTCQMCHQQRR 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0135 619 ProSiteProfiles Zinc finger RING-type profile. 139 183 IPR001841 -
Prci6g0135 619 SMART ibrneu5 274 344 IPR002867 GO:0008270
Prci6g0135 619 SMART ibrneu5 208 270 IPR002867 GO:0008270
Prci6g0135 619 MobiDBLite consensus disorder prediction 551 589 - -
Prci6g0135 619 SUPERFAMILY RING/U-box 289 337 - -
Prci6g0135 619 ProSiteProfiles TRIAD supradomain profile. 135 348 IPR044066 -
Prci6g0135 619 Pfam IBR domain, a half RING-finger domain 287 334 IPR002867 GO:0008270
Prci6g0135 619 Pfam IBR domain, a half RING-finger domain 208 270 IPR002867 GO:0008270
Prci6g0135 619 SUPERFAMILY RING/U-box 135 217 - -
Prci6g0135 619 Gene3D - 588 619 - -
Prci6g0135 619 CDD Rcat_RBR_ARI7-like 293 347 - -
Prci6g0135 619 SUPERFAMILY Ran binding protein zinc finger-like 591 618 IPR036443 -
Prci6g0135 619 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 221 IPR013083 -
Prci6g0135 619 MobiDBLite consensus disorder prediction 1 33 - -
Prci6g0135 619 ProSitePatterns Zinc finger RanBP2-type signature. 595 614 IPR001876 -
Prci6g0135 619 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 69 436 IPR031127 GO:0004842|GO:0016567
Prci6g0135 619 FunFam RBR-type E3 ubiquitin transferase 133 222 - -
Prci6g0135 619 SUPERFAMILY RING/U-box 209 277 - -
Prci6g0135 619 Pfam Ariadne domain 358 481 IPR045840 -
Prci6g0135 619 FunFam RBR-type E3 ubiquitin transferase 271 511 - -
Prci6g0135 619 CDD BRcat_RBR_ANKIB1 216 279 - -
Prci6g0135 619 Gene3D - 266 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0135 Prci-Chr6 771977 779328 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0135 17 618 ARIADNE family AT1G65430 66.393 0.0 805
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0135 K11968 - pcin:129313099 1205.28