Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0070 ATGGAATACACTTCTCATAAGGGAAAGGACAGTGGGTACTGGAATTCTCCTCAAGCCCATTTGGAGGGACCAGCATCATTAGATGGTAGCACAAGAAATTCAATTTCGGAGGATATGCTCACCACCTTCTCTGAGCTCATAAATTTTGACACTTATGCTGGTTGGTGCAATAACTCATCAACCACAGATCAGGTTTTAGCTAATGGCTTTTCATCATATGCCTCGGTACCATGTGCGTCACTTGATGGATTCAATTTAATGGAGGAGAGTAGTGGATCGTTCTTGGCAAGTGATGTTAATAAGAATTACAATGTCACAAGAAGTTTCCCCAACTCTGGAGAGAAAGTAGCATTTCAGCAAATGGAGGCCCAACTTGAGTTCTCTGATGATGGAAATGATGCCAGGAATTTAAACTGTAAACAACGTTTTCATGAATCCTTTGAAGAACTTAGTAACTTAGCGATGGGCAATTATATAGTTTCTAGGCCACCTGGCTGGTCACTAGATGAGAGAATGCTGAGGGCTTTGTCCCTTTTCAAGGAATCTGCTGGCGGGGGAATCTTGGCACAAGTTTGGGTACCGAGAAAGCATGGAGATCAATTCATCTTAACCACAAGTGAGCAACCCTATTTGCTGGATCAAATGCTTGCGGGTTATCGTGAAGTGTCACGGACATTTACATTCTCGGCAGAAGGAAGGCCAGGCTCTGTCTTGGGACTTCCTGGTCGCGTCTTTATCTCTAAAGTTCCTGAGTGGACTTCCAATGTTGGTTACTACACAAAGGCTGAATATTTGAGGATTGAGCATGCTATTAATCATGAGGTTCGTGGATCAATTGCCATTCCAGTGTTTGATCTTTATTCTGAAATGCCATGCTGTGCTGTACTGGAGCTTGTCACTACAAAGGAAAAGACTGATTTTGATAGAGAACTGGAAATTGTTTGCCAAGCACTTCAGGTTGTGAATTTAAGGACTGCTGTGACTCCCCGACTTCTTCCCCAGAGTCTCTCAAATAACAAAAGAGCAGCTTTAATGGAGATAATTGATGTGTTACGGGCTGTGTGTCATGCACATAGTATGCCTCTGGCATTGACATGGATTCCGTGTTGTTACTTGAAGGGAATTGGCAATGAAACTGTGAGAGTACGAATTAAGGAGGGTCATTCAAGTTTTAGTGATAAGTGTGTATTATGCATTGAAGAATCAGCTTGCTATGTTAATGATAGATTGATGGAAGGATTTATTCATGCATGTATTGAGCATCATCTTGAGGAAGGGCAAGGTACAGCTGGCAAAGCTATCATGTCAAATCAGCCATTCTTCTATCCTGATGTCAAGGCATATGATGTTGGTGAATATCCACTTGTTCAACATGCACGCAAATACAATTTGAATGCTGCGGTTGCTATAAGGCTAAGGAGTACCTTCACTAATGATGACGATTACATTTTAGAATTTTTTCTACCTGTCAATATGAGAGGGAGTTCAGAGCAGCAACTTTTATTGGACAACCTCTCGGGTACCATGCAGAGAATTTGTAAGAGTTTAAGGACTGTTACTGATGCTGAATTATCAGGAACATCAGGGTCACTGGTAAATCTTCAAAATGAAAAAGTACGAGATCTTTTGCCTTTGTCTAGGAGAAACACTCAAATAGAATTAATGGATGGTGACAAGGACTCAGTCAGTAAGATTTCATCGAAGGATTGCAACTTGAGAAACAATGGAATTGAAGCTGCTTATAACCAGGAAATGAATGGGTCAAAAAGGCAGATTGAGAAAAAGAGAAGCATGGGTGAGAAGAATGTCAGTTTGAGTGTTCTCCAGCAATACTTTTCTGGTAGTCTGAAGGATGCTGCGAAGAGCATTGGTGTCTGTCCTACAACTCTGAAAAGGATATGCAGGCAGCATGGCATTTCGAGATGGCCATCCCGTAAAATAAATAAAGTGAATCGTTCATTAAAGAAAATCCAGACCGTGCTTGATTCTGTTCAGGGGGTGGAAGGTGGGCTAAAGTTCGACCCGTCTACTGGGGGGTTTGTGGCGGGGGGTTCAATCATTCAAGAATTTGATGCACATGGTCGTCTTTTGTTCTCTGAGAAGAGTATGCCCGTACAAGATGCTGAGCGTGTTACAAAATGTACAGTCTCAGTGCCTACAGTACATTGCAGTGAAGGGGAGAGTTCAGCAATTAAGTTGGAAGATAATGATGTTTATTTGTCTGATAACCAGCTTGTGTGCTCACAAGGTGTTATTATCCCAAATTCTGGCGAGGGAGACTTGAAGAAAGCCAATGCTTCTGTTGTTAGTTGTAGTCAATATTCAAAATCAATGGCCTTGGATGGTGGATCATGCCGGATGGTCAAGGCTCAGGGTCATCCTGTGCAAGCACCCTTTTCAGTTGCTGCAAAAGATGGAAACGCATGGGGTCTGAACAGGGATAGTCGGGGAGCAAAAAATTCTGGTCCTGATATTGTCTCTTGGAGTTCAAGCTCTCTGGTTGCTGATGAGACGGAAAATGTTGTGGATGGGGACAACGGGATTGTTGAACACGGCCAACGTACTTCTTATAACGTGACAGACTCGTCCAATGGCTCTGGTTCAATGATCCATGGCAGTTCGTCTGGTGCCCTAAGCTTTGAGAATCAGAAGCATTCCAAAGTCAAATCAACGTTTGTTGACAGTGGATTAAAAATTATTGTGAAAGCCACCTATAAAGATGATACTATACGTTTCAAGTTTGACCCATCTGCAGGTTGTCTCCAACTATACGAAGAAGTAGCAACAAGATTCAAATTATCAAGCGGGTCATTCCAGCTTAAATATCTAGATGATGAAGAGGAATGGGTGATGTTGGTAAATGACTCAGATTTGCAAGAGTGCGTGGAAATATCGGAAGATATGGGCACACGTAGTGTGAAGTTTCTTGTTCGTGATACGCCTTGCTTGTTAAGCAGCTCTGGCAGTAGCAATTGCTTCTTGGGAGACTCCTAG 2994 0.4242 MEYTSHKGKDSGYWNSPQAHLEGPASLDGSTRNSISEDMLTTFSELINFDTYAGWCNNSSTTDQVLANGFSSYASVPCASLDGFNLMEESSGSFLASDVNKNYNVTRSFPNSGEKVAFQQMEAQLEFSDDGNDARNLNCKQRFHESFEELSNLAMGNYIVSRPPGWSLDERMLRALSLFKESAGGGILAQVWVPRKHGDQFILTTSEQPYLLDQMLAGYREVSRTFTFSAEGRPGSVLGLPGRVFISKVPEWTSNVGYYTKAEYLRIEHAINHEVRGSIAIPVFDLYSEMPCCAVLELVTTKEKTDFDRELEIVCQALQVVNLRTAVTPRLLPQSLSNNKRAALMEIIDVLRAVCHAHSMPLALTWIPCCYLKGIGNETVRVRIKEGHSSFSDKCVLCIEESACYVNDRLMEGFIHACIEHHLEEGQGTAGKAIMSNQPFFYPDVKAYDVGEYPLVQHARKYNLNAAVAIRLRSTFTNDDDYILEFFLPVNMRGSSEQQLLLDNLSGTMQRICKSLRTVTDAELSGTSGSLVNLQNEKVRDLLPLSRRNTQIELMDGDKDSVSKISSKDCNLRNNGIEAAYNQEMNGSKRQIEKKRSMGEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGGLKFDPSTGGFVAGGSIIQEFDAHGRLLFSEKSMPVQDAERVTKCTVSVPTVHCSEGESSAIKLEDNDVYLSDNQLVCSQGVIIPNSGEGDLKKANASVVSCSQYSKSMALDGGSCRMVKAQGHPVQAPFSVAAKDGNAWGLNRDSRGAKNSGPDIVSWSSSSLVADETENVVDGDNGIVEHGQRTSYNVTDSSNGSGSMIHGSSSGALSFENQKHSKVKSTFVDSGLKIIVKATYKDDTIRFKFDPSAGCLQLYEEVATRFKLSSGSFQLKYLDDEEEWVMLVNDSDLQECVEISEDMGTRSVKFLVRDTPCLLSSSGSSNCFLGDS 997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0070 997 Pfam PB1 domain 901 979 IPR000270 GO:0005515
Prci6g0070 997 CDD PB1_NLP 899 979 IPR034891 -
Prci6g0070 997 ProSiteProfiles RWP-RK domain profile. 584 670 IPR003035 -
Prci6g0070 997 MobiDBLite consensus disorder prediction 1 32 - -
Prci6g0070 997 Gene3D - 896 979 - -
Prci6g0070 997 ProSiteProfiles PB1 domain profile. 898 980 IPR000270 GO:0005515
Prci6g0070 997 PANTHER PROTEIN NLP8 106 991 IPR045012 GO:0003700
Prci6g0070 997 SMART PB1_new 898 980 IPR000270 GO:0005515
Prci6g0070 997 SUPERFAMILY CAD & PB1 domains 898 982 - -
Prci6g0070 997 Pfam RWP-RK domain 602 650 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0070 Prci-Chr6 478574 485254 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0070 13 995 NLP Transcription Factor Family AT2G43500 48.807 0.0 826
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Prci6g0070 PB1 5.1e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0070 - - aprc:113864503 1325.84