Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0034 ATGACGGCTAGCTCCTTCTGCAATGCTGACTCTGTGTTTTCGAGAGAAGAAGGTGTAGATATTAGAAAGATGATGGAACCGAAAAGGAGCTTCTGCTCTGTGGATCAAAGCAATTATACCTCTATTGCATCCAAAAGACAAAAGGCTGATTTATCCATTTCCACAAAGGAGAGAAAGGAGAAGATTGGGGAACGAATTGTTGCCTTGCAGCAGCTCGTTTCACCATTTGGGAAGTCAGATACAGCTTCTGTCCTTTTAGAGGCAACGCACTACATAAGGTTCCTTCATAAACAAGTGCTTAGTGCTCCTTATCTGCAATGCTCTCCTACAACCAAAACGCAGGATATAGGGATTGGGGCGTACAGCCTGAGGAGTAGAGGATTATGTCTGGTACCAGTGTCGTATACGATTGGAGTTGCTCAGAGTAATGGTGCGGATATATGGGCCCCCACCAAAAGCACACCGTCACAATTTGCCTAG 480 0.4521 MTASSFCNADSVFSREEGVDIRKMMEPKRSFCSVDQSNYTSIASKRQKADLSISTKERKEKIGERIVALQQLVSPFGKSDTASVLLEATHYIRFLHKQVLSAPYLQCSPTTKTQDIGIGAYSLRSRGLCLVPVSYTIGVAQSNGADIWAPTKSTPSQFA 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0034 159 Gene3D - 43 104 IPR036638 GO:0046983
Prci6g0034 159 CDD bHLH_AtbHLH_like 52 99 IPR045239 -
Prci6g0034 159 SMART finulus 52 101 IPR011598 GO:0046983
Prci6g0034 159 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 36 136 - -
Prci6g0034 159 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 95 IPR011598 GO:0046983
Prci6g0034 159 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 100 IPR036638 GO:0046983
Prci6g0034 159 FunFam Transcription factor bHLH113 family 45 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0034 Prci-Chr6 318806 326639 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0034 24 153 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05710 53.896 7.07e-51 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0034 - - pcin:129312787 309.686