Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0030 ATGAACCCCTACGTGATGGATTTGGCCCTGGATTTCCTAGTTCCGTCTCTGTGGGAGATCAAAGTTACAGTGGCCACCTCCATGTTTGTGATAATCATCTATTGGTTTTTCACGTACAGAACTGGAGACTTTGATGATCGAGTACTTGTTGACAATTCTGGGGATGCTTCTGACGACAAAGACAAGATGGTCCAGTTTAAAGGCGATTCTCAGACCAATTCGGCATATTTGATTAAGTTGGAACTTTTGGCTGCTAAGAATCTTGTTGGTGCAAATTTAAATGGTACATCAGATCCTTATGCTATCATCACGTGTGGCAACGAGAAGCGATTCAGTTCCATGGTTCCTGGTTCAAGAAATCCTATGTGGGGTGAGGAGTTCAATTTCTCTGTTGATGAACTTCCTGTCCAGATTAACATTACGATATATGATTGGGATATTATTTGGAAAAGTGCTGTTCTAGGTTCAGTGACTGTTCTGGTTGAAAGCGAAGGTCAAACTGGTGCAGTATGGTATACATTAGATAGCCCATCAGGGCAGGTTTGCCTTCACATAAAAACAAGAAAGCTGTCCGCAAATTCTTCCAGGATGAATGGCTTTGGCGGAGCCAACACTCGAAGAAGGATGCCTACTGAAAGGCAAGGCCCAACTGTCGTTCATCAAAAGCCAGGACCTCTTCAGACAATATTTAATCTTCTTCCGGATGAGGTTGTTGAACATAGTTACTCTTGTGCACTTGAGAGGTCATTTTTGTATCATGGTCGTATGTATGTCTCAGCATGGCATATTTGCTTCCATTCTAACGTGTTCTCTAAGCAAATGAAGGTGGTTGTTCCATTTGAGGATATAGATGAGATCCGAAGGAGTCAGCATGCATTTATTAATCCTTCTATAACAATTATTCTTCGCATGGGTGCGGGTGGACATGGTGTACCTCCTTTGGGAAGTCCTGATGGTAGAGTAAGATACAAGTTTGCATCGTTTTGGAATAGGAATCATACATTTAGAAATTTACAACGTGCAGCAAAGATTTTCCGTGAAATGCTGGAAGCTGAGAAGAAGGAAAATGCAGAGTCAGAGTTGCGTGCACATAGCAGTTCTGTTAGGGGAAATAAGACACCAGATAAGGTTCCTGAAGGAAGCATAGGAAAAACTGGAAAATCTCAACCTTTTGTCAAAGAAGAGGCTTTAGTTGGTATATATAATGATGTTTTCCCTTCCAAGGCTGAGCAGTTCTTTAACTTGTTATTTGACAATGATTCAAAATTTACGAGCGAGTATCGTTCAGTACGAAAGGATACTAATCTAGTGGTGTTTGAAACCGTCCAACAGGCACATGATGTACCATTTGGGTCCTACTTTGAGGTGCATTGTAAATGGAGTTTGGAGACAATTGACGAAAGTTCAAGTATGTTGGACATAAAAGTTGGTGCGCACTTTAAGAAATGGTGTGTGATGCAATCTAAAATCAAGGCAGGGGCAGTCAATGAGTACAAGAAAGAAGTTGATGTGATGTTAGAAGTTGCCCGATCTTATGTAAAGAACAACGCTTCTGGTGGTGAGACTGACACCGCGGTCTCAGACAGCTCCTAA 1593 0.4162 MNPYVMDLALDFLVPSLWEIKVTVATSMFVIIIYWFFTYRTGDFDDRVLVDNSGDASDDKDKMVQFKGDSQTNSAYLIKLELLAAKNLVGANLNGTSDPYAIITCGNEKRFSSMVPGSRNPMWGEEFNFSVDELPVQINITIYDWDIIWKSAVLGSVTVLVESEGQTGAVWYTLDSPSGQVCLHIKTRKLSANSSRMNGFGGANTRRRMPTERQGPTVVHQKPGPLQTIFNLLPDEVVEHSYSCALERSFLYHGRMYVSAWHICFHSNVFSKQMKVVVPFEDIDEIRRSQHAFINPSITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHTFRNLQRAAKIFREMLEAEKKENAESELRAHSSSVRGNKTPDKVPEGSIGKTGKSQPFVKEEALVGIYNDVFPSKAEQFFNLLFDNDSKFTSEYRSVRKDTNLVVFETVQQAHDVPFGSYFEVHCKWSLETIDESSSMLDIKVGAHFKKWCVMQSKIKAGAVNEYKKEVDVMLEVARSYVKNNASGGETDTAVSDSS 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0030 530 SMART gram2001c 224 290 IPR004182 -
Prci6g0030 530 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 76 186 IPR035892 -
Prci6g0030 530 SMART C2_3c 77 173 IPR000008 -
Prci6g0030 530 MobiDBLite consensus disorder prediction 194 220 - -
Prci6g0030 530 ProSiteProfiles C2 domain profile. 58 172 IPR000008 -
Prci6g0030 530 PANTHER BAG-ASSOCIATED GRAM PROTEIN 1 5 438 IPR044655 -
Prci6g0030 530 FunFam BAG-associated GRAM protein 1 isoform X2 225 344 - -
Prci6g0030 530 Coils Coil 335 355 - -
Prci6g0030 530 Pfam VAD1 Analog of StAR-related lipid transfer domain 437 496 IPR031968 -
Prci6g0030 530 Pfam GRAM domain 227 299 IPR004182 -
Prci6g0030 530 MobiDBLite consensus disorder prediction 356 387 - -
Prci6g0030 530 Gene3D C2 domain 60 191 IPR035892 -
Prci6g0030 530 CDD C2 78 174 - -
Prci6g0030 530 CDD PH-GRAM_C2-GRAM 235 343 - -
Prci6g0030 530 PRINTS C2 domain signature 93 105 IPR000008 -
Prci6g0030 530 PRINTS C2 domain signature 117 130 IPR000008 -
Prci6g0030 530 PRINTS C2 domain signature 138 146 IPR000008 -
Prci6g0030 530 Gene3D - 225 343 IPR011993 -
Prci6g0030 530 ProSiteProfiles VASt domain profile. 346 517 IPR031968 -
Prci6g0030 530 Pfam C2 domain 79 174 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0030 Prci-Chr6 298364 310313 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0030 52 162 C2H2 Transcription Factor Family AT4G21160 25.225 1.41e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0030 - - gmx:100813208 853.973