Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0027 ATGGTCCAGTTTAAAGGCGATTCTCAGACCAATTCGGCATATTTGATTAAGTTGGAACTTTTGGCTGCTAAGAATCTTGTTGGTGCAAATTTAAATGGTACATCAGATCCTTATGCTATCATCACGTGTGGCAACGAGAAGCGATTCAGTTCCATGGTTCCTGGTTCAAGAAATCCTATGTGGGGTGAGGAGTTCAATTTCTCTGTTGATGAACTTCCTGTCCAGATTAACATTACGATATATGATTGGGATATTATTTGGAAAAGTGCTGTTCTAGGTTCAGTGACTGTTCTGGTTGAAAGCGAAGGTCAAACTGGTGCAGTATGGTATACATTAGATAGCCCATCAGGGCAGGTTTGCCTTCACATAAAAACAAGAAAGCTGTCCGCAAATTCTTCCAGGATGAATGGCTTTGGCGGAGCCAACACTCGAAGAAGGATGCCTACTGAAAGGCAAGGCCCAACTGTCGTTCATCAAAAGCCAGGACCTCTTCAGACAATATTTAATCTTCTTCCGGATGAGGTTGTTGAACATAGTTACTCTTGTGCACTTGAGAGGTCATTTTTGTATCATGGTCGTATGTATGTCTCAGCATGGCATATTTGCTTCCATTCTAACGTGTTCTCTAAGCAAATGAAGGTGGTTGTTCCATTTGAGGATATAGATGAGATCCGAAGGAGTCAGCATGCATTTATTAATCCTTCTATAACAATTATTCTTCGCATGGGTGCGGGTGGACATGGTGTACCTCCTTTGGGAAGTCCTGATGGTAGAGTAAGATACAAGTTTGCATCGTTTTGGAATAGGAATCATACATTTAGAAATTTACAACGTGCAGCAAAGATTTTCCGTGAAATGCTGGAAGCTGAGAAGAAGGAAAATGCAGAGTCAGAGTTGCGTGCACATAGCAGTTCTGTTAGGGGAAATAAGACACCAGATAAGGTTCCTGAAGGAAGCATAGGAAAAACTGGAAAATCTCAACCTTTTGTCAAAGAAGAGGCTTTAGTTGGTATATATAATGATGTTTTCCCTTCCAAGGCTGAGCAGTTCTTTAACTTGTTATTTGACAATGATTCAAAATTTACGAGCGAGTATCGTTCAGTACGAAAGGATACTAATCTAGTGATGGGACAGTGGCATACAGCAGATGAATATGATGGTCAAGTGAGAGAGATAACCTTCAGATCTCTTTGTAACAGTCCTATGTGCCCTCCAGACACTGCCATGACAGAGTGGCAACATGTTGTTTTATCGCCAGACAAGCAAAAATTGGTGTTTGAAACCGTCCAACAGGCACATGATGTACCATTTGGGTCCTACTTTGAGGTGCATTGTAAATGGAGTTTGGAGACAATTGACGAAAGTTCAAGTATGTTGGACATAAAAGTTGGTGCGCACTTTAAGAAATGGTGTGTGATGCAATCTAAAATCAAGGCAGGGGCAGTCAATGAGTACAAGAAAGAAGTTGATGTGATGTTAGAAGTTGCCCGATCTTATGTAAAGAACAACGCTTCTGGTGGTGAGACTGACACCGCGGTCTCAGACAGCTCCTAA 1554 0.4151 MVQFKGDSQTNSAYLIKLELLAAKNLVGANLNGTSDPYAIITCGNEKRFSSMVPGSRNPMWGEEFNFSVDELPVQINITIYDWDIIWKSAVLGSVTVLVESEGQTGAVWYTLDSPSGQVCLHIKTRKLSANSSRMNGFGGANTRRRMPTERQGPTVVHQKPGPLQTIFNLLPDEVVEHSYSCALERSFLYHGRMYVSAWHICFHSNVFSKQMKVVVPFEDIDEIRRSQHAFINPSITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHTFRNLQRAAKIFREMLEAEKKENAESELRAHSSSVRGNKTPDKVPEGSIGKTGKSQPFVKEEALVGIYNDVFPSKAEQFFNLLFDNDSKFTSEYRSVRKDTNLVMGQWHTADEYDGQVREITFRSLCNSPMCPPDTAMTEWQHVVLSPDKQKLVFETVQQAHDVPFGSYFEVHCKWSLETIDESSSMLDIKVGAHFKKWCVMQSKIKAGAVNEYKKEVDVMLEVARSYVKNNASGGETDTAVSDSS 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0027 517 Gene3D - 163 281 IPR011993 -
Prci6g0027 517 Pfam GRAM domain 165 237 IPR004182 -
Prci6g0027 517 CDD C2 16 112 - -
Prci6g0027 517 SMART gram2001c 162 228 IPR004182 -
Prci6g0027 517 PANTHER BAG-ASSOCIATED GRAM PROTEIN 1 2 513 IPR044655 -
Prci6g0027 517 SMART C2_3c 15 111 IPR000008 -
Prci6g0027 517 ProSiteProfiles C2 domain profile. 1 110 IPR000008 -
Prci6g0027 517 CDD PH-GRAM_C2-GRAM 173 281 - -
Prci6g0027 517 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 14 124 IPR035892 -
Prci6g0027 517 ProSiteProfiles VASt domain profile. 334 504 IPR031968 -
Prci6g0027 517 PRINTS C2 domain signature 31 43 IPR000008 -
Prci6g0027 517 PRINTS C2 domain signature 76 84 IPR000008 -
Prci6g0027 517 PRINTS C2 domain signature 55 68 IPR000008 -
Prci6g0027 517 Pfam C2 domain 17 112 IPR000008 -
Prci6g0027 517 MobiDBLite consensus disorder prediction 294 326 - -
Prci6g0027 517 Gene3D C2 domain 2 129 IPR035892 -
Prci6g0027 517 MobiDBLite consensus disorder prediction 132 158 - -
Prci6g0027 517 FunFam BAG-associated GRAM protein 1 isoform X2 163 282 - -
Prci6g0027 517 Pfam VAD1 Analog of StAR-related lipid transfer domain 338 483 IPR031968 -
Prci6g0027 517 Coils Coil 273 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0027 Prci-Chr6 298364 310313 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0027 1 100 C2H2 Transcription Factor Family AT4G21160 26.000 1.43e-06 48.5