LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci689g0002	ATGGATAGAAACCCTCCTCCTGCGAACTTGCCTCAACAAGAACAGCCTTCTGCTTCTTCGCCTTCTCCTTCTGTCCTACAAGTGCCTTCGTCTCATGAGTCTTCTTCGTCTCTGAGGACGCTGAGATCACCGGGCGGGTCGTCGTCGGGTCAGCACACCAGCAGGAGACACGCAACGTTCCGGGGAATCCGGAGCCGAAGCGGAAAATGGGTGTCGGAGATACGGGAGCCTCGTAAAACCACGCGCATTTGGCTGGGGACGTACCCGACGCCGGAGATGGCTGCGGCCGCCTATGACGTGGCGGCACTTGCATTGAAGGGGCCTGACACGACCCTGAACTTCCCCAATTTGATTCTCTCTTACCCGATCCCAGCGTCATTGTCGGCGGCCGATATTCGGGCGGCGGCTGCTGCGGCTGCAGAGGCGAGGCTGGTGAGGTCTGAGGAAAGCGGAGGACAGAACGCTGGAGAAAGAGGAGGAAGCCAAGCCGAGGGCTCGAGCCAGCCGGGAGAAGTGGCGGTGGAGAAAAGCGAGGAATTTATCGATGAGGACGAGCTATTGAATATGCCTAGTTTGCTGGATGACATGGCGAGGGGAATGCAGGTGAGTCCGCCGAGGATGAAGTCTCCGTACGCTTCCGATGATTCACCGGGCAATTCAGATCATGGAGATAGCCTCTGGAGTTTTTGA	690	0.5783	MDRNPPPANLPQQEQPSASSPSPSVLQVPSSHESSSSLRTLRSPGGSSSGQHTSRRHATFRGIRSRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAALALKGPDTTLNFPNLILSYPIPASLSAADIRAAAAAAAEARLVRSEESGGQNAGERGGSQAEGSSQPGEVAVEKSEEFIDEDELLNMPSLLDDMARGMQVSPPRMKSPYASDDSPGNSDHGDSLWSF	229

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci689g0002	229	MobiDBLite	consensus disorder prediction	1	69	-	-
	Prci689g0002	229	MobiDBLite	consensus disorder prediction	154	168	-	-
	Prci689g0002	229	SUPERFAMILY	DNA-binding domain	60	116	IPR016177	GO:0003677
	Prci689g0002	229	ProSiteProfiles	AP2/ERF domain profile.	59	115	IPR001471	GO:0003700\|GO:0006355
	Prci689g0002	229	Gene3D	AP2/ERF domain	59	116	IPR036955	GO:0003700\|GO:0006355
	Prci689g0002	229	MobiDBLite	consensus disorder prediction	213	229	-	-
	Prci689g0002	229	MobiDBLite	consensus disorder prediction	13	56	-	-
	Prci689g0002	229	CDD	AP2	60	117	IPR001471	GO:0003700\|GO:0006355
	Prci689g0002	229	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED	35	200	-	-
	Prci689g0002	229	SMART	rav1_2	59	121	IPR001471	GO:0003700\|GO:0006355
	Prci689g0002	229	FunFam	Ethylene-responsive transcription factor 2	58	116	-	-
	Prci689g0002	229	Pfam	AP2 domain	61	107	IPR001471	GO:0003700\|GO:0006355
	Prci689g0002	229	MobiDBLite	consensus disorder prediction	147	229	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci689g0002	54	229	AP2-EREBP Transcription Factor Family	AT5G52020	58.696	7.36e-54	171

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Prci689g0002		AP2	2.8e-10	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci689g0002	-		-	pcin:129293795	385.185