Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci646g0003 ATGGCGGGAGCTACAGGCAGAGCCCTGCTCACTCTCTCTCTAAACTCCAAACTCTTACCACTCGCACGCTTATCTCATGGCCACACCATTCCATTTCTCAAACTGTCTGCAAGACCCAGTAGGGTTTTGCTAGGGTTTAGGCCCCTCTGCTCTGCCACTACCACCGCCACGGCCACCGTTGCCGACACGACGGAGTCCATTGACCCCGACCAAATCAAGCATTCAATTCTTCTTGAGAGACTCAGATTCAAACACCTCAAGGATTCCGCTAAAACCCCTGAAATCAAGAATTCAACGAAGTCAGTTGCTATATCTGAGAAGGGTCGTGAGAAAGAGGGGAAGAAGTCAGAGAAGAAGAAGTTGGTTGGAAGTTTTGAGGAGTTGGGCCTCAGTGATGAGGTAATGGGAGCCGTGAAGCAGATGAATATTGAGGTTCCTACTGAGATTCAGTGTATCGGTATCCCTGCTGTCTTGGAAGAGAAGAGTGTCGTTTTGGGATCTCATACTGGGTCTGGCAAGACTCTTGCTTACATGCTTCCTCTGGTTCAGTTGCTTAGACGGGATGAACAATTGAATGGATTGCATATGAAGCCCAGGCGTCCCCGAGCTGTTGTGCTATGCCCTACGAGGGAGTTGTCTGAGCAGGTATTTCGAGTTGCAAAATCTATTAGCCATCATGCAAGGTTTAGGTCTACAATGGTAAGTGGGGGTGGCCGTATCAGGCCTCAGGAGGATTCATTAAATAACCCCATTGACATGGTTGTTGGTACTCCGGGCAGAATTTTGCAGCACATTGAGGAAGGCAACATGGTATATGGTGACATCAAATACTTGGTGTTGGATGAGGCAGACACAATGTTTGATCGAGGTTTTGGTCCTGATATACGCAAGTTTATTGGCCCACTAAAACATCGCACATCAAAACCTGATGGCCTGGGTTTTCAGACTATTTTGGTTACAGCAACCATGACAAAGGCAGTGCAGAAGTTGATCGATGAGGAGTTTCAAGGCATTGTGCACCTGCGAACATCAACACTGCATAAAAAGATTGCCTCTGCTCGTCATGATTTTATTAAGTTGTCAGGTTCTGAGAACAAGCTGGAGGCATTACTGCAGGTTCTGGAGCCGAGCCTTGCAAAAGGGAATAGAGTGATGGTTTTCTGCAATACACTGGATTCTAGCCGTGCAGTGGATCATTTTCTTGGTGAAAATCAGATATCGACTGTTAATTACCATGGAGAGGTACCAGCAGAGCGAAGGGTTGAAAACCTCAAGAAGTTTAAGAGTGATGAAGATGATTGCCCTACATTAGTTTGCACAGACTTGGCTGCTAGGGGTCTGGATTTGGATGTCGATCATGTTATCATGTTTGATTTTCCTTTGACCTCTATTGATTACCTTCACCGCACTGGTAGAACAGCTCGCATGGGTGCAAAGGGGAAAGTAACTAGCTTGGTTGCAAAAAAAGACGTAACCCTGGCCACTAGAATAGAAGAAGCAATAAGGAAAAATGAGAGCTTGGAGGCTATCAGTAAAGAAAGTCTCAGGAGGGAGATTGCCAGGTCCCAAATAACTCAGAAGGGGAAGAATACAAAATTGGTAAAGGTTTCCAAAGCAAAGAACACTTCTACTCCCCGTGCTGCCATGTCTCGGAAAGTATCGAAGAAGCCATCAGTATCCAAAGCATCAAAAAGTTCTTCTGGTGTTAATACTGTTTCTAGAAAAACATCCAAGCCATTAAAACCAGGGAAGTCAGGAGGAGGAATTAAGGTTAAAAGTTCTGTAAGGTCGTCTTCCAGTGCAAGCAGCCTGAAAAAGGTTTCAGCGAGGAAGATGCAAACAAGTAAGAGAGACAGTGCTGGAAAATCCTCGAATTCTAAACTGAGTGTTGTTGGTTTTAGGGGACGGAGTTCCTCAAACAAGAAGGAATCACAATTTTGA 1941 0.4539 MAGATGRALLTLSLNSKLLPLARLSHGHTIPFLKLSARPSRVLLGFRPLCSATTTATATVADTTESIDPDQIKHSILLERLRFKHLKDSAKTPEIKNSTKSVAISEKGREKEGKKSEKKKLVGSFEELGLSDEVMGAVKQMNIEVPTEIQCIGIPAVLEEKSVVLGSHTGSGKTLAYMLPLVQLLRRDEQLNGLHMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRIRPQEDSLNNPIDMVVGTPGRILQHIEEGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFIGPLKHRTSKPDGLGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLAKGNRVMVFCNTLDSSRAVDHFLGENQISTVNYHGEVPAERRVENLKKFKSDEDDCPTLVCTDLAARGLDLDVDHVIMFDFPLTSIDYLHRTGRTARMGAKGKVTSLVAKKDVTLATRIEEAIRKNESLEAISKESLRREIARSQITQKGKNTKLVKVSKAKNTSTPRAAMSRKVSKKPSVSKASKSSSGVNTVSRKTSKPLKPGKSGGGIKVKSSVRSSSSASSLKKVSARKMQTSKRDSAGKSSNSKLSVVGFRGRSSSNKKESQF 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci646g0003 646 SMART ultradead3 142 361 IPR014001 -
Prci646g0003 646 MobiDBLite consensus disorder prediction 591 609 - -
Prci646g0003 646 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 497 IPR027417 -
Prci646g0003 646 CDD DEADc 134 333 - -
Prci646g0003 646 MobiDBLite consensus disorder prediction 103 118 - -
Prci646g0003 646 SMART helicmild6 395 477 IPR001650 -
Prci646g0003 646 Gene3D - 85 342 IPR027417 -
Prci646g0003 646 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 154 341 IPR014001 -
Prci646g0003 646 Pfam DEAD/DEAH box helicase 147 330 IPR011545 GO:0003676|GO:0005524
Prci646g0003 646 Pfam Helicase conserved C-terminal domain 366 477 IPR001650 -
Prci646g0003 646 MobiDBLite consensus disorder prediction 522 646 - -
Prci646g0003 646 MobiDBLite consensus disorder prediction 559 578 - -
Prci646g0003 646 MobiDBLite consensus disorder prediction 618 646 - -
Prci646g0003 646 Coils Coil 497 517 - -
Prci646g0003 646 MobiDBLite consensus disorder prediction 524 549 - -
Prci646g0003 646 CDD SF2_C_DEAD 354 486 - -
Prci646g0003 646 Gene3D - 351 578 IPR027417 -
Prci646g0003 646 MobiDBLite consensus disorder prediction 90 118 - -
Prci646g0003 646 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 123 151 IPR014014 GO:0003724
Prci646g0003 646 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 366 516 IPR001650 -
Prci646g0003 646 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 65 513 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci646g0003 122 499 Eukaryotic Initiation Factors Gene Family AT3G19760 26.963 2.61e-38 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci646g0003 - - pcin:129297913 1137.48