Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci632g0005 ATGAATTTTCCTGGTTGGAATTTTGAGAATGATGGCTGTGTCACCAATCAAAAGAAGTTCATGGGGTCGGGCCAAGAACTTGTGGAGCTGATATGGCAAAATGGACAGGTAGTTACGCACAGCCAAACGCAAAGAAAACCAGTTGCGACTTCTATCGACTCGAGACAGTTCCAGAGAGATGATCAATCAACAATCAGGGCTAATGAATCGTATGGGAACTCAAGCCATTTGATTCAAGAAGATGATGCAGTCTCATGGATTCAATATCCACTTGAGGATCCATTGGAACAACAACTCTGTTCAAGCATATTATCTGAACTGCCATCCTCTGGGTTTGAGTCTGACAAGCCAATAAGGCAACTCGAAGAGGGAAAGTATGTCAAATTCGGCCCCTACAGTGCCTGCCATGTGACTACAAGTTCACAAACACCAAATCTAAAGCCCTTTTCTCAGGAATTCTCAGGAAATCCTATGCCTGCTCCAAGAGTTCATTTTCCTGATTCAACGCTGAAAAAAATTAGTTTTGGCGGATCACAAAATGTCGTCAATTTTTCTCAGTTTTCAAAACCCTCCAAAGTAGCCTCAACATCTTCTAATGCACAGTCTGAAGATAAAGGTAATTGTAATCTATTGAAAAACAAAGGTAAAGAGTGCTCGGTCGTGACAGTGGGTTCAAGTCACTGTGGCAGCAACCAAGTTCCTCTAGATCCTGACATAAGCAGGGCATCAAGCAGTGGGGTTTGGACTACTGCTTTGTATTCTGAAACTGAGCCCCAGAAGGATGGTGTCCAGAAATCAATTCCTCAGTGTGAAAAAGGGAAGTCAGAGGTGCTTGAACCAACTTTGAGTTCATCATCAGATGACTCAGGTAGTCTTGCAAAAACATGCTCCTGGTCTGTAAGAAACCACGGCCAAAAAAGGAAAAGGATAGATGCAGAAGAATTAGAGGAACAAAGTGAGGCCACAGAACCCAAATCGGCTGTTGAAAACAAGGTAGCTCAGGGGACAAGGCCTTGCCGAAGGAACCGTGCAGCTGAAGTGCATAATCTCTCAGAAAGGAGACGAAGAGATCGGATCAATGAGAAGATGAGGACATTGCAACAACTCATACCTCATAGCAACAAGACAGATAAAGCATCAATGTTAGATGAGGCAATCGAGTACTTGAAATCACTTCAGTTACAACTTCAGGTAATGTGGATGGGAGCTGGAATGGCACCAATGATGTTTCCAGGAATTCAGCACTATATGTCCCCAATGGGCATGGGAATGGCTTCGCCCTCTTTTCCTCCTATTCCAAATCCGGTGCAGTTACCAAGAACATCACTTGATCATTCCATATCTATGGCTCAGACGCCGAACCAGGGTTTGATGCATCAAGCTCCTGTTATGGGTCCTTTTACTTATCAAAATCAGATGCAAAATCAAGCTTTCTCAGAGCAATACGCACGTTATATGGGGTATCAATTTATGCAAAGTGCCTCTCAGCCGATGAATGTATTTAATTATGGATCTCAAGTACAACATAGTCAAACAATGATTCCACCCAGCAGTAGCAGTGAACCCTTGAATGGAGCTGCAAATAATGATGTTAATTTAAGTGGCAAGATGGGTTTAACTAGTTTATGA 1629 0.4291 MNFPGWNFENDGCVTNQKKFMGSGQELVELIWQNGQVVTHSQTQRKPVATSIDSRQFQRDDQSTIRANESYGNSSHLIQEDDAVSWIQYPLEDPLEQQLCSSILSELPSSGFESDKPIRQLEEGKYVKFGPYSACHVTTSSQTPNLKPFSQEFSGNPMPAPRVHFPDSTLKKISFGGSQNVVNFSQFSKPSKVASTSSNAQSEDKGNCNLLKNKGKECSVVTVGSSHCGSNQVPLDPDISRASSSGVWTTALYSETEPQKDGVQKSIPQCEKGKSEVLEPTLSSSSDDSGSLAKTCSWSVRNHGQKRKRIDAEELEEQSEATEPKSAVENKVAQGTRPCRRNRAAEVHNLSERRRRDRINEKMRTLQQLIPHSNKTDKASMLDEAIEYLKSLQLQLQVMWMGAGMAPMMFPGIQHYMSPMGMGMASPSFPPIPNPVQLPRTSLDHSISMAQTPNQGLMHQAPVMGPFTYQNQMQNQAFSEQYARYMGYQFMQSASQPMNVFNYGSQVQHSQTMIPPSSSSEPLNGAANNDVNLSGKMGLTSL 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci632g0005 542 SMART finulus 349 398 IPR011598 GO:0046983
Prci632g0005 542 FunFam Basic helix-loop-helix transcription factor 338 401 - -
Prci632g0005 542 Pfam Helix-loop-helix DNA-binding domain 347 393 IPR011598 GO:0046983
Prci632g0005 542 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 341 407 IPR036638 GO:0046983
Prci632g0005 542 MobiDBLite consensus disorder prediction 510 542 - -
Prci632g0005 542 PANTHER TRANSCRIPTION FACTOR PIF3 13 510 IPR044273 GO:0003700|GO:0006355
Prci632g0005 542 Gene3D - 339 399 IPR036638 GO:0046983
Prci632g0005 542 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 343 392 IPR011598 GO:0046983
Prci632g0005 542 CDD bHLH_AtPIF_like 343 406 IPR047265 -
Prci632g0005 542 MobiDBLite consensus disorder prediction 304 324 - -
Prci632g0005 542 MobiDBLite consensus disorder prediction 253 336 - -
Prci632g0005 542 MobiDBLite consensus disorder prediction 278 300 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci632g0005 3 96 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G59060 36.893 4.01e-11 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci632g0005 HLH 1.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci632g0005 K16189 - gmx:100784531 627.476