Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g2488 ATGAAAACCAATGAGAAGAGTGGTTTGAACTTGGATAAGGAAGTCTTGTATATAATGAGTACTCGAGCGCTCAGGGGTGCTGCTGTCAGAAGTTACCGGCGGAGGAAGACAGCTCTGGACTTGGATCTTAACCGGGATCCACCTGTTGAAAGTCGGGAGCTGGAGGGACCTTCAGCTCAGCTGGAGCCTCAAGCTGGCCTTCAACTGCAGGTTGCACAAGCACAACCTGCAATGATTGATGTTGAGGCCATTGATGATGATGTTGTTGAATCTACTCCCCGGGCTTTTGCTGAGGCTAAAAACAATTCAAGGAGAAATCGCAGCAGGGCTATAGTTGATGTGGATTTAGAAGATCGGACTAGGGTAACTAATAATAATCGCAACAAACGCAGAAGAGGTTCTCCAAGCCAAACAATTATTAACTGTGATCTTTATATAAACTTGGAAGGCAGTAGCGGTTCTATGAAAGAAAATGTTAGGAAGTCTCCTGAACCTCCGAAGGAGCCTGTTTTCAACTGCCCAATCTGTATGGGTCCTTTGGCGGAAGAAATGTCGACAAGGTGTGGTCATATTTTTTGCAAGAGTTGCATTAAGGCTGCGATAAATGCACAGGGTAAATGCCCTACCTGTAGGAAAAAGGTTACCGCGAAAGAGCTCATAAGGGTTTTTCTGCCATCAACTACTTGA 687 0.4527 MKTNEKSGLNLDKEVLYIMSTRALRGAAVRSYRRRKTALDLDLNRDPPVESRELEGPSAQLEPQAGLQLQVAQAQPAMIDVEAIDDDVVESTPRAFAEAKNNSRRNRSRAIVDVDLEDRTRVTNNNRNKRRRGSPSQTIINCDLYINLEGSSGSMKENVRKSPEPPKEPVFNCPICMGPLAEEMSTRCGHIFCKSCIKAAINAQGKCPTCRKKVTAKELIRVFLPSTT 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g2488 228 ProSiteProfiles Zinc finger RING-type profile. 173 211 IPR001841 -
Prci5g2488 228 ProSitePatterns Zinc finger RING-type signature. 188 197 IPR017907 -
Prci5g2488 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 226 IPR013083 -
Prci5g2488 228 PANTHER ELFLESS, ISOFORM B 19 227 - -
Prci5g2488 228 SUPERFAMILY RING/U-box 172 217 - -
Prci5g2488 228 SMART ring_2 173 210 IPR001841 -
Prci5g2488 228 Pfam Zinc finger, C3HC4 type (RING finger) 172 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g2488 Prci-Chr5 41321038 41328364 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g2488 30 227 C3H Transcription Factor Family AT5G48655 52.475 1.54e-53 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g2488 K22651 - qsa:O6P43_016885 286.574