Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g2473 ATGGGCGAGTCTAGCAATAAATCTGCTCCCAATTTTGACGCTGCTGTTGCTGGAGTTTCACCATCGAAGTCTGCCACGATTGGAAAGAGGGAGGCTGAGGATGAACCTGAGAAGCTAGTGACTGCAAAGAAGCAGAAGAGAGACTGGGTTTCCGAAAATCAAAGGAAGGAAAGTAGTTCAGATGATTCGTTTTCAGATCCTGGAAACTCAGACGAAGATTCTGGTTTGAACGATTCCAAGTTAGCCACTGCTGAAGGCAAGAGTGGACCCAGTGCTGTGAAGAAGAAAGTCGAATCAAGGTCAGATACAGGGAGTAGCTCTATTGACAAAGATGATATAAAAACAGAGGCAACCATAGTGCCTGAGAAATTCCCTGATGCTAGTGAGAAAGATCCTGCTAAGGAAGTTGATTCAAGTAAAGCCTCAGGCTTAGATTCTGACACCAGAACTAATGAGGATATGGACAATGTAACCACATCATCGAAGGAGTTGCTTGCTACTTCTGCTGCAGGTAATAATATATCTACTAAGAAGGTTGAGTCAAGCAATGACTCATCCCTGGATAGTGGCTTAGATGAGGAGGATGTCCAGAAAGCACATGTGACATCATCCAAGAAGCTGCCTGCTTCTTCAGTTGCTCAAAGGGAGGGGATTGAGAAAATTGACAACTCCTATGATGAATCAAGAGAAGGCTTTGATGAATGCAATGTTTCCGAAGAAAATGAGGAGATCAAGGAGAAGCCTTCTACTACTCCTCAGAAAAATGTGAAAGATGATGAAATGGTTGATGCTGCCTCAACAGGGGCAACTAGAAAGGAAGTTCCTAAATCAGCTGCTGCTCCAGAAAAACAAAATGCCACATCAAAAAAAATATTTGTTGGTAACTTATCCTACGAGGTGAAAAGGGCCAATTTGGAAGATTTATTTAAGAATTGTGGAGAAATTGTTGATGTCTCTTTTGGTTTATATCGCGATGGGATGTTTAGAGGCTTTGCACATGTTGAGTTTGCCACTGAAGAAGCTGCGAAACATGCCCTTATGTTGAATGGGAGAGAGCTGTTAAGACGTTTTGTCAGAATTGAGATAGCCCGTGAAAAGTTTGCTTATACCCCTAATAGCAGGAACAACTCATTGAAGGGTTTTCAAGCATCCTTTGGAGAAGATGGGCCTACAACGTCAGCACCGTCTGAAGAACAAAATGCCAGATCGAAGATGCTATTTGTTGGAAACTTGTCATATAGTGCGGAAAGGGCTGATTTGGAAAATTTATTTAAAGATTGTGGAGAAATTGTTGATATTCGATTTGCTACAGATCGTGAAGGGAGGTTTAAAGGCTTCGCTCATGTTTTATTTGACACAGAAGAAGCAGCACAAAGTGCCCTTATGTTGAACGGAGAAGAACTGTTGAGACGACCTCTCAGACTTGATCTAGCTCCTGAAAGGGGTGCATATACACGCAGTATCAAGAATGAAGCTACCCGGGAGGATCCTTCATTAGCAGGAAATGAGGCTAGAATGCCAGCTGCTCCAAAAGAACAAAATGCCACATCAAAGACAGTATTTGTCGGAAACTTGTCATATAGCGTGGAAAGGGTTGATTTGGAAAATTTATTTAAAGACTGTGGAGAAATTATTGATATCCGTTTAGCTACAGATCGTGAAGGGAGGTTTAAAGGATTTGGACATGTTGAGTTTGCCACTCAAGAAGCAGCACGAAATGCCCTTAAGTTGAATGGAAACGAACTGTTGAGACAATATATAAGGCTTGATTTGGCTAATGAAAAGATTGTGCATTCTTCCAGTAGCAGGGACGGCTCTGGAAGTGTTGAGTCTCAAACAGTGTTTGTAAGGGGTTTTGATACATCCTTAAGAGAAGATGAGATAAGAAATAGCCTGGAAGAGCATTTCAGTTCTTGTGGAGTAATTTCAAGGATATCAATTGCACGAGATTATGGCACCGGTTCTACTAAAGGGTATGCTTGGTTGGACTTCATGGATGTTGATGGCTTTAATAAAGCACTAGAACTTGATGGAATTGAGGTTGGAGGTTATATATTGTCTGTGGAGAGAAGACGACCTCGGCGTTATATTCAAGATGGTAGAGGTGGCAGTGATCAAATAGGCGGATGGCGTGGCGGTGATCAAATAGGCGGATGGCATGGTGGTGATCAATTTGGTGGATGGCGTGGTGGTGATCAAGTTGGTGGATGGCATGGAGGTGGCCAATGGGGTCATGGAAGAGGTTATGCCAGCAGGTGGCATTGA 2265 0.4269 MGESSNKSAPNFDAAVAGVSPSKSATIGKREAEDEPEKLVTAKKQKRDWVSENQRKESSSDDSFSDPGNSDEDSGLNDSKLATAEGKSGPSAVKKKVESRSDTGSSSIDKDDIKTEATIVPEKFPDASEKDPAKEVDSSKASGLDSDTRTNEDMDNVTTSSKELLATSAAGNNISTKKVESSNDSSLDSGLDEEDVQKAHVTSSKKLPASSVAQREGIEKIDNSYDESREGFDECNVSEENEEIKEKPSTTPQKNVKDDEMVDAASTGATRKEVPKSAAAPEKQNATSKKIFVGNLSYEVKRANLEDLFKNCGEIVDVSFGLYRDGMFRGFAHVEFATEEAAKHALMLNGRELLRRFVRIEIAREKFAYTPNSRNNSLKGFQASFGEDGPTTSAPSEEQNARSKMLFVGNLSYSAERADLENLFKDCGEIVDIRFATDREGRFKGFAHVLFDTEEAAQSALMLNGEELLRRPLRLDLAPERGAYTRSIKNEATREDPSLAGNEARMPAAPKEQNATSKTVFVGNLSYSVERVDLENLFKDCGEIIDIRLATDREGRFKGFGHVEFATQEAARNALKLNGNELLRQYIRLDLANEKIVHSSSSRDGSGSVESQTVFVRGFDTSLREDEIRNSLEEHFSSCGVISRISIARDYGTGSTKGYAWLDFMDVDGFNKALELDGIEVGGYILSVERRRPRRYIQDGRGGSDQIGGWRGGDQIGGWHGGDQFGGWRGGDQVGGWHGGGQWGHGRGYASRWH 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g2473 754 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 614 684 IPR000504 GO:0003723
Prci5g2473 754 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 406 473 IPR000504 GO:0003723
Prci5g2473 754 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 520 587 IPR000504 GO:0003723
Prci5g2473 754 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 291 358 IPR000504 GO:0003723
Prci5g2473 754 SUPERFAMILY RNA-binding domain, RBD 608 722 IPR035979 GO:0003676
Prci5g2473 754 Gene3D - 371 483 IPR012677 -
Prci5g2473 754 Gene3D - 213 370 IPR012677 -
Prci5g2473 754 Gene3D - 484 602 IPR012677 -
Prci5g2473 754 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 518 594 IPR000504 GO:0003723
Prci5g2473 754 MobiDBLite consensus disorder prediction 153 186 - -
Prci5g2473 754 MobiDBLite consensus disorder prediction 27 62 - -
Prci5g2473 754 Gene3D - 603 750 IPR012677 -
Prci5g2473 754 MobiDBLite consensus disorder prediction 266 285 - -
Prci5g2473 754 MobiDBLite consensus disorder prediction 91 152 - -
Prci5g2473 754 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 289 365 IPR000504 GO:0003723
Prci5g2473 754 SMART rrm1_1 405 476 IPR000504 GO:0003723
Prci5g2473 754 SMART rrm1_1 519 590 IPR000504 GO:0003723
Prci5g2473 754 SMART rrm1_1 290 361 IPR000504 GO:0003723
Prci5g2473 754 SMART rrm1_1 613 689 IPR000504 GO:0003723
Prci5g2473 754 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 75 382 - -
Prci5g2473 754 MobiDBLite consensus disorder prediction 219 259 - -
Prci5g2473 754 MobiDBLite consensus disorder prediction 63 77 - -
Prci5g2473 754 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 404 480 IPR000504 GO:0003723
Prci5g2473 754 MobiDBLite consensus disorder prediction 380 400 - -
Prci5g2473 754 SUPERFAMILY RNA-binding domain, RBD 509 607 IPR035979 GO:0003676
Prci5g2473 754 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 612 693 IPR000504 GO:0003723
Prci5g2473 754 SUPERFAMILY RNA-binding domain, RBD 395 484 IPR035979 GO:0003676
Prci5g2473 754 MobiDBLite consensus disorder prediction 486 515 - -
Prci5g2473 754 MobiDBLite consensus disorder prediction 1 259 - -
Prci5g2473 754 SUPERFAMILY RNA-binding domain, RBD 278 373 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g2473 Prci-Chr5 41182866 41207290 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g2473 291 695 Eukaryotic Initiation Factors Gene Family AT2G23350 25.352 1.72e-19 91.3