Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g2470 ATGGGCGAGTCTAGCAATAAATCTGCTCCCAATTTTGACGCTGCTGTTGCTGGAGTTTCACCATCGAAGTCTGCCACGATTGGAAAGAGGGAGGCTGAGGATGAACCTGAGAAGCTAGTGACTGCAAAGAAGCAGAAGAGAGACTGGGTTTCCGAAAATCAAAGGAAGGAAAGTAGTTCAGATGATTCGTTTTCAGATCCTGGAAACTCAGACGAAGATTCTGGTTTGAACGATTCCAAGTTAGCCACTGCTGAAGGCAAGAGTGGACCCAGTGCTGTGAAGAAGAAAGTCGAATCAAGGTCAGATACAGGGAGTAGCTCTATTGACAAAGATGATATAAAAACAGAGGCAACCATAGTGCCTGAGAAATTCCCTGATGCTAGTGAGAAAGATCCTGCTAAGGAAGTTGATTCAAGTAAAGCCTCAGGCTTAGATTCTGACACCAGAACTAATGAGGATATGGACAATGTAACCACATCATCGAAGGAGTTGCTTGCTACTTCTGCTGCAGGTAATAATATATCTACTAAGAAGGTTGAGTCAAGCAATGACTCATCCCTGGATAGTGGCTTAGATGAGGAGGATGTCCAGAAAGCACATGTGACATCATCCAAGAAGCTGCCTGCTTCTTCAGTTGCTCAAAGGGAGGGGATTGAGAAAATTGACAACTCCTATGATGAATCAAGAGAAGGCTTTGATGAATGCAATGTTTCCGAAGAAAATGAGGAGATCAAGGAGAAGCCTTCTACTACTCCTCAGAAAAATGTGAAAGATGATGAAATGGTTGATGCTGCCTCAACAGGGGCAACTAGAAAGGAACCTAAATCAGCTGCTGCTCCAGAAAAACAAAATGCCACATCAAAAAAAATATTTGTTGGTAACTTATCCTACGAGGTGAAAAGGGCCAATTTGGAAGATTTATTTAAGAATTGTGGAGAAATTGTTGATGTCTCTTTTGGTTTATATCGCGATGGGATGTTTAGAGGCTTTGCACATGTTGAGTTTGCCACTGAAGAAGCTGCGAAACATGCCCTTATGTTGAATGGGAGAGAGCTGTTAAGACGTTTTGTCAGAATTGAGATAGCCCGTGAAAAGTTTGCTTATACCCCTAATAGCAGTTGTATGAACAGGAACAACTCATTGAAGGGTTTTCAAGCATCCTTTGGAGAAGATGGGCCTACAACGTCAGCACCGTCTGAAGAACAAAATGCCAGATCGAAGATGCTATTTGTTGGAAACTTGTCATATAGTGCGGAAAGGGCTGATTTGGAAAATTTATTTAAAGATTGTGGAGAAATTGTTGATATTCGATTTGCTACAGATCGTGAAGGGAGGTTTAAAGGCTTCGCTCATGTTTTATTTGACACAGAAGAAGCAGCACAAAGTGCCCTTATGTTGAACGGAGAAGAACTGTTGAGACGACCTCTCAGACTTGATCTAGCTCCTGAAAGGGGTGCATATACACGCAGTATCAAGAATGAAGCTACCCGGGAGGATCCTTCATTAGCAGGAAATGAGGCTAGAATGCCAGCTGCTCCAAAAGAACAAAATGCCACATCAAAGACAGTATTTGTCGGAAACTTGTCATATAGCGTGGAAAGGGTTGATTTGGAAAATTTATTTAAAGACTGTGGAGAAATTATTGATATCCGTTTAGCTACAGATCGTGAAGGGAGGTTTAAAGGATTTGGACATGTTGAGTTTGCCACTCAAGAAGCAGCACGAAATGCCCTTAAGTTGAATGGAAACGAACTGTTGAGACAATATATAAGGCTTGATTTGGCTAATGAAAAGATTGTGCATTCTTCCAGTAGCAGGGACGGCTCTGGAAGTGTTGAGTCTCAAACAGTGTTTGTAAGGGGTTTTGATACATCCTTAAGAGAAGATGAGATAAGAAATAGCCTGGAAGAGCATTTCAGTTCTTGTGGAGTAATTTCAAGGATATCAATTGCACGAGATTATGGCACCGGTTCTACTAAAGGGTATGCTTGGTTGGACTTCATGGATGTTGATGGCTTTAATAAAGCACTAGAACTTGATGGAATTGAGGTTGGAGGTTATATATTGTCTGTGGAGAGAAGACGACCTCGGCGTTATATTCAAGATGGTAGAGGTGGCAGTGATCAAATAGGCGGATGGCGTGGCGGTGATCAAATAGGCGGATGGCATGGTGGTGATCAATTTGGTGGATGGCGTGGTGGTGATCAAGTTGGTGGATGGCATGGAGGTGGCCAATGGGGTCATGGAAGAGGTTATGCCAGCAGGTGGCATTGA 2274 0.4266 MGESSNKSAPNFDAAVAGVSPSKSATIGKREAEDEPEKLVTAKKQKRDWVSENQRKESSSDDSFSDPGNSDEDSGLNDSKLATAEGKSGPSAVKKKVESRSDTGSSSIDKDDIKTEATIVPEKFPDASEKDPAKEVDSSKASGLDSDTRTNEDMDNVTTSSKELLATSAAGNNISTKKVESSNDSSLDSGLDEEDVQKAHVTSSKKLPASSVAQREGIEKIDNSYDESREGFDECNVSEENEEIKEKPSTTPQKNVKDDEMVDAASTGATRKEPKSAAAPEKQNATSKKIFVGNLSYEVKRANLEDLFKNCGEIVDVSFGLYRDGMFRGFAHVEFATEEAAKHALMLNGRELLRRFVRIEIAREKFAYTPNSSCMNRNNSLKGFQASFGEDGPTTSAPSEEQNARSKMLFVGNLSYSAERADLENLFKDCGEIVDIRFATDREGRFKGFAHVLFDTEEAAQSALMLNGEELLRRPLRLDLAPERGAYTRSIKNEATREDPSLAGNEARMPAAPKEQNATSKTVFVGNLSYSVERVDLENLFKDCGEIIDIRLATDREGRFKGFGHVEFATQEAARNALKLNGNELLRQYIRLDLANEKIVHSSSSRDGSGSVESQTVFVRGFDTSLREDEIRNSLEEHFSSCGVISRISIARDYGTGSTKGYAWLDFMDVDGFNKALELDGIEVGGYILSVERRRPRRYIQDGRGGSDQIGGWRGGDQIGGWHGGDQFGGWRGGDQVGGWHGGGQWGHGRGYASRWH 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g2470 757 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 521 597 IPR000504 GO:0003723
Prci5g2470 757 MobiDBLite consensus disorder prediction 153 186 - -
Prci5g2470 757 SMART rrm1_1 616 692 IPR000504 GO:0003723
Prci5g2470 757 SMART rrm1_1 289 360 IPR000504 GO:0003723
Prci5g2470 757 SMART rrm1_1 408 479 IPR000504 GO:0003723
Prci5g2470 757 SMART rrm1_1 522 593 IPR000504 GO:0003723
Prci5g2470 757 MobiDBLite consensus disorder prediction 27 62 - -
Prci5g2470 757 SUPERFAMILY RNA-binding domain, RBD 398 487 IPR035979 GO:0003676
Prci5g2470 757 MobiDBLite consensus disorder prediction 489 518 - -
Prci5g2470 757 MobiDBLite consensus disorder prediction 91 152 - -
Prci5g2470 757 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 288 364 IPR000504 GO:0003723
Prci5g2470 757 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 615 696 IPR000504 GO:0003723
Prci5g2470 757 Gene3D - 604 753 IPR012677 -
Prci5g2470 757 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 407 483 IPR000504 GO:0003723
Prci5g2470 757 SUPERFAMILY RNA-binding domain, RBD 277 379 IPR035979 GO:0003676
Prci5g2470 757 SUPERFAMILY RNA-binding domain, RBD 611 725 IPR035979 GO:0003676
Prci5g2470 757 SUPERFAMILY RNA-binding domain, RBD 512 610 IPR035979 GO:0003676
Prci5g2470 757 MobiDBLite consensus disorder prediction 219 259 - -
Prci5g2470 757 MobiDBLite consensus disorder prediction 63 77 - -
Prci5g2470 757 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 523 590 IPR000504 GO:0003723
Prci5g2470 757 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 290 357 IPR000504 GO:0003723
Prci5g2470 757 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 409 476 IPR000504 GO:0003723
Prci5g2470 757 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 617 687 IPR000504 GO:0003723
Prci5g2470 757 Gene3D - 213 368 IPR012677 -
Prci5g2470 757 Gene3D - 375 487 IPR012677 -
Prci5g2470 757 Gene3D - 488 603 IPR012677 -
Prci5g2470 757 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 75 387 - -
Prci5g2470 757 MobiDBLite consensus disorder prediction 1 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g2470 Prci-Chr5 41182865 41207290 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g2470 510 695 Eukaryotic Initiation Factors Gene Family AT1G22760 27.692 5.95e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g2470 - K11294 pcin:129311628 1399.8