Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g2469 ATGGGCGAGTCTAGCAATAAATCTGCTCCCAATTTTGACGCTGCTGTTGCTGGAGTTTCACCATCGAAGTCTGCCACGATTGGAAAGAGGGAGGCTGAGGATGAACCTGAGAAGCTAGTGACTGCAAAGAAGCAGAAGAGAGACTGGGTTTCCGAAAATCAAAGGAAGGAAAGTAGTTCAGATGATTCGTTTTCAGATCCTGGAAACTCAGACGAAGATTCTGGTTTGAACGATTCCAAGTTAGCCACTGCTGAAGGCAAGAGTGGACCCAGTGCTGTGAAGAAGAAAGTCGAATCAAGGTCAGATACAGGGAGTAGCTCTATTGACAAAGATGATATAAAAACAGAGGCAACCATAGTGCCTGAGAAATTCCCTGATGCTAGTGAGAAAGATCCTGCTAAGGAAGTTGATTCAAGTAAAGCCTCAGGCTTAGATTCTGACACCAGAACTAATGAGGATATGGACAATGTAACCACATCATCGAAGGAGTTGCTTGCTACTTCTGCTGCAGGTAATAATATATCTACTAAGAAGGTTGAGTCAAGCAATGACTCATCCCTGGATAGTGGCTTAGATGAGGAGGATGTCCAGAAAGCACATGTGACATCATCCAAGAAGCTGCCTGCTTCTTCAGTTGCTCAAAGGGAGGGGATTGAGAAAATTGACAACTCCTATGATGAATCAAGAGAAGGCTTTGATGAATGCAATGTTTCCGAAGAAAATGAGGAGATCAAGGAGAAGCCTTCTACTACTCCTCAGAAAAATGTGAAAGATGATGAAATGGTTGATGCTGCCTCAACAGGGGCAACTAGAAAGGAAGTTCCTAAATCAGCTGCTGCTCCAGAAAAACAAAATGCCACATCAAAAAAAATATTTGTTGGTAACTTATCCTACGAGGTGAAAAGGGCCAATTTGGAAGATTTATTTAAGAATTGTGGAGAAATTGTTGATGTCTCTTTTGGTTTATATCGCGATGGGATGTTTAGAGGCTTTGCACATGTTGAGTTTGCCACTGAAGAAGCTGCGAAACATGCCCTTATGTTGAATGGGAGAGAGCTGTTAAGACGTTTTGTCAGAATTGAGATAGCCCGTGAAAAGTTTGCTTATACCCCTAATAGCAGTTGTATGAACAGGAACAACTCATTGAAGGGTTTTCAAGCATCCTTTGGAGAAGATGGGCCTACAACGTCAGCACCGTCTGAAGAACAAAATGCCAGATCGAAGATGCTATTTGTTGGAAACTTGTCATATAGTGCGGAAAGGGCTGATTTGGAAAATTTATTTAAAGATTGTGGAGAAATTGTTGATATTCGATTTGCTACAGATCGTGAAGGGAGGTTTAAAGGCTTCGCTCATGTTTTATTTGACACAGAAGAAGCAGCACAAAGTGCCCTTATGTTGAACGGAGAAGAACTGTTGAGACGACCTCTCAGACTTGATCTAGCTCCTGAAAGGGGTGCATATACACGCAGTATCAAGAATGAAGCTACCCGGGAGGATCCTTCATTAGCAGGAAATGAGGCTAGAATGCCAGCTGCTCCAAAAGAACAAAATGCCACATCAAAGACAGTATTTGTCGGAAACTTGTCATATAGCGTGGAAAGGGTTGATTTGGAAAATTTATTTAAAGACTGTGGAGAAATTATTGATATCCGTTTAGCTACAGATCGTGAAGGGAGGTTTAAAGGATTTGGACATGTTGAGTTTGCCACTCAAGAAGCAGCACGAAATGCCCTTAAGTTGAATGGAAACGAACTGTTGAGACAATATATAAGGCTTGATTTGGCTAATGAAAAGATTGTGCATTCTTCCAGTAGCAGGGACGGCTCTGGAAGTGTTGAGTCTCAAACAGTGTTTGTAAGGGGTTTTGATACATCCTTAAGAGAAGATGAGATAAGAAATAGCCTGGAAGAGCATTTCAGTTCTTGTGGAGTAATTTCAAGGATATCAATTGCACGAGATTATGGCACCGGTTCTACTAAAGGATATTGCATCCAAAACATTGAACTCCTTGGCAAGGATTCCAGCCATAGGGGGCTAGAAGGCAATAGTACCTATAAAGTATGCTTGGTTGGACTTCATGGATGTTGA 2091 0.418 MGESSNKSAPNFDAAVAGVSPSKSATIGKREAEDEPEKLVTAKKQKRDWVSENQRKESSSDDSFSDPGNSDEDSGLNDSKLATAEGKSGPSAVKKKVESRSDTGSSSIDKDDIKTEATIVPEKFPDASEKDPAKEVDSSKASGLDSDTRTNEDMDNVTTSSKELLATSAAGNNISTKKVESSNDSSLDSGLDEEDVQKAHVTSSKKLPASSVAQREGIEKIDNSYDESREGFDECNVSEENEEIKEKPSTTPQKNVKDDEMVDAASTGATRKEVPKSAAAPEKQNATSKKIFVGNLSYEVKRANLEDLFKNCGEIVDVSFGLYRDGMFRGFAHVEFATEEAAKHALMLNGRELLRRFVRIEIAREKFAYTPNSSCMNRNNSLKGFQASFGEDGPTTSAPSEEQNARSKMLFVGNLSYSAERADLENLFKDCGEIVDIRFATDREGRFKGFAHVLFDTEEAAQSALMLNGEELLRRPLRLDLAPERGAYTRSIKNEATREDPSLAGNEARMPAAPKEQNATSKTVFVGNLSYSVERVDLENLFKDCGEIIDIRLATDREGRFKGFGHVEFATQEAARNALKLNGNELLRQYIRLDLANEKIVHSSSSRDGSGSVESQTVFVRGFDTSLREDEIRNSLEEHFSSCGVISRISIARDYGTGSTKGYCIQNIELLGKDSSHRGLEGNSTYKVCLVGLHGC 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g2469 696 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 618 664 IPR000504 GO:0003723
Prci5g2469 696 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 291 358 IPR000504 GO:0003723
Prci5g2469 696 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 524 591 IPR000504 GO:0003723
Prci5g2469 696 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 410 477 IPR000504 GO:0003723
Prci5g2469 696 SUPERFAMILY RNA-binding domain, RBD 521 664 IPR035979 GO:0003676
Prci5g2469 696 MobiDBLite consensus disorder prediction 153 186 - -
Prci5g2469 696 Gene3D - 488 601 IPR012677 -
Prci5g2469 696 Gene3D - 376 487 IPR012677 -
Prci5g2469 696 Gene3D - 602 665 IPR012677 -
Prci5g2469 696 Gene3D - 216 369 IPR012677 -
Prci5g2469 696 SMART rrm1_1 523 594 IPR000504 GO:0003723
Prci5g2469 696 SMART rrm1_1 617 692 IPR000504 GO:0003723
Prci5g2469 696 SMART rrm1_1 290 361 IPR000504 GO:0003723
Prci5g2469 696 SMART rrm1_1 409 480 IPR000504 GO:0003723
Prci5g2469 696 MobiDBLite consensus disorder prediction 27 62 - -
Prci5g2469 696 MobiDBLite consensus disorder prediction 266 285 - -
Prci5g2469 696 SUPERFAMILY RNA-binding domain, RBD 278 380 IPR035979 GO:0003676
Prci5g2469 696 MobiDBLite consensus disorder prediction 91 152 - -
Prci5g2469 696 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 522 598 IPR000504 GO:0003723
Prci5g2469 696 SUPERFAMILY RNA-binding domain, RBD 399 488 IPR035979 GO:0003676
Prci5g2469 696 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 289 365 IPR000504 GO:0003723
Prci5g2469 696 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 408 484 IPR000504 GO:0003723
Prci5g2469 696 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 75 380 - -
Prci5g2469 696 MobiDBLite consensus disorder prediction 219 259 - -
Prci5g2469 696 MobiDBLite consensus disorder prediction 63 77 - -
Prci5g2469 696 MobiDBLite consensus disorder prediction 1 259 - -
Prci5g2469 696 MobiDBLite consensus disorder prediction 490 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g2469 Prci-Chr5 41182863 41203338 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g2469 524 669 Eukaryotic Initiation Factors Gene Family AT2G36660 26.000 5.41e-08 54.3