Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g2468 ATGGGCGAGTCTAGCAATAAATCTGCTCCCAATTTTGACGCTGCTGTTGCTGGAGTTTCACCATCGAAGTCTGCCACGATTGGAAAGAGGGAGGCTGAGGATGAACCTGAGAAGCTAGTGACTGCAAAGAAGCAGAAGAGAGACTGGGTTTCCGAAAATCAAAGGAAGGAAAGTAGTTCAGATGATTCGTTTTCAGATCCTGGAAACTCAGACGAAGATTCTGGTTTGAACGATTCCAAGTTAGCCACTGCTGAAGGCAAGAGTGGACCCAGTGCTGTGAAGAAGAAAGTCGAATCAAGGTCAGATACAGGGAGTAGCTCTATTGACAAAGATGATATAAAAACAGAGGCAACCATAGTGCCTGAGAAATTCCCTGATGCTAGTGAGAAAGATCCTGCTAAGGAAGTTGATTCAAGTAAAGCCTCAGGCTTAGATTCTGACACCAGAACTAATGAGGATATGGACAATGTAACCACATCATCGAAGGAGTTGCTTGCTACTTCTGCTGCAGGTAATAATATATCTACTAAGAAGGTTGAGTCAAGCAATGACTCATCCCTGGATAGTGGCTTAGATGAGGAGGATGTCCAGAAAGCACATGTGACATCATCCAAGAAGCTGCCTGCTTCTTCAGTTGCTCAAAGGGAGGGGATTGAGAAAATTGACAACTCCTATGATGAATCAAGAGAAGGCTTTGATGAATGCAATGTTTCCGAAGAAAATGAGGAGATCAAGGAGAAGCCTTCTACTACTCCTCAGAAAAATGTGAAAGATGATGAAATGGTTGATGCTGCCTCAACAGGGGCAACTAGAAAGGAAGTTCCTAAATCAGCTGCTGCTCCAGAAAAACAAAATGCCACATCAAAAAAAATATTTGTTGGTAACTTATCCTACGAGGTGAAAAGGGCCAATTTGGAAGATTTATTTAAGAATTGTGGAGAAATTGTTGATGTCTCTTTTGGTTTATATCGCGATGGGATGTTTAGAGGCTTTGCACATGTTGAGTTTGCCACTGAAGAAGCTGCGAAACATGCCCTTATGTTGAATGGGAGAGAGCTGTTAAGACGTTTTGTCAGAATTGAGATAGCCCGTGAAAAGTTTGCTTATACCCCTAATAGCAGTTGTATGAACAGGAACAACTCATTGAAGGGTTTTCAAGCATCCTTTGGAGAAGATGGGCCTACAACGTCAGCACCGTCTGAAGAACAAAATGCCAGATCGAAGATGCTATTTGTTGGAAACTTGTCATATAGTGCGGAAAGGGCTGATTTGGAAAATTTATTTAAAGATTGTGGAGAAATTGTTGATATTCGATTTGCTACAGATCGTGAAGGGAGGTTTAAAGGCTTCGCTCATGTTTTATTTGACACAGAAGAAGCAGCACAAAGTGCCCTTATGTTGAACGGAGAAGAACTGTTGAGACGACCTCTCAGACTTGATCTAGCTCCTGAAAGGGGTGCATATACACGCAGTATCAAGAATGAAGCTACCCGGGAGGATCCTTCATTAGCAGGAAATGAGGCTAGAATGCCAGCTGCTCCAAAAGAACAAAATGCCACATCAAAGACAGTATTTGTCGGAAACTTGTCATATAGCGTGGAAAGGGTTGATTTGGAAAATTTATTTAAAGACTGTGGAGAAATTATTGATATCCGTTTAGCTACAGATCGTGAAGGGAGGTTTAAAGGATTTGGACATGTTGAGTTTGCCACTCAAGAAGCAGCACGAAATGCCCTTAAGTTGAATGGAAACGAACTGTTGAGACAATATATAAGGCTTGATTTGGCTAATGAAAAGATTGTGCATTCTTCCAGTAGCAGGGACGGCTCTGGAAGTGTTGAGTCTCAAACAGTGTTTGTAAGGGGTTTTGATACATCCTTAAGAGAAGATGAGATAAGAAATAGCCTGGAAGAGCATTTCAGTTCTTGTGGAGTAATTTCAAGGATATCAATTGCACGAGATTATGGCACCGGTTCTACTAAAGGGTATGCTTGGTTGGACTTCATGGATGTTGATGGCTTTAATAAAGCACTAGAACTTGATGGAATTGAGGTTGGAGGTTATATATTGTCTGTGGAGAGAAGACGACCTCGGCGTTATATTCAAGATGGTAGAGGTGGCAGTGATCAAATAGGCGGATGGCGTGGCGGTGATCAAATAGGCGGATGGCATGGTGGTGATCAATTTGGTGGATGGCGTGGTGGTGATCAAGTTGGTGGATGGCATGGAGGTGGCCAATGGGGTCATGGAAGAGGTTATGCCAGCAGGTGGCATTGA 2277 0.4264 MGESSNKSAPNFDAAVAGVSPSKSATIGKREAEDEPEKLVTAKKQKRDWVSENQRKESSSDDSFSDPGNSDEDSGLNDSKLATAEGKSGPSAVKKKVESRSDTGSSSIDKDDIKTEATIVPEKFPDASEKDPAKEVDSSKASGLDSDTRTNEDMDNVTTSSKELLATSAAGNNISTKKVESSNDSSLDSGLDEEDVQKAHVTSSKKLPASSVAQREGIEKIDNSYDESREGFDECNVSEENEEIKEKPSTTPQKNVKDDEMVDAASTGATRKEVPKSAAAPEKQNATSKKIFVGNLSYEVKRANLEDLFKNCGEIVDVSFGLYRDGMFRGFAHVEFATEEAAKHALMLNGRELLRRFVRIEIAREKFAYTPNSSCMNRNNSLKGFQASFGEDGPTTSAPSEEQNARSKMLFVGNLSYSAERADLENLFKDCGEIVDIRFATDREGRFKGFAHVLFDTEEAAQSALMLNGEELLRRPLRLDLAPERGAYTRSIKNEATREDPSLAGNEARMPAAPKEQNATSKTVFVGNLSYSVERVDLENLFKDCGEIIDIRLATDREGRFKGFGHVEFATQEAARNALKLNGNELLRQYIRLDLANEKIVHSSSSRDGSGSVESQTVFVRGFDTSLREDEIRNSLEEHFSSCGVISRISIARDYGTGSTKGYAWLDFMDVDGFNKALELDGIEVGGYILSVERRRPRRYIQDGRGGSDQIGGWRGGDQIGGWHGGDQFGGWRGGDQVGGWHGGGQWGHGRGYASRWH 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g2468 758 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 75 380 - -
Prci5g2468 758 SUPERFAMILY RNA-binding domain, RBD 612 726 IPR035979 GO:0003676
Prci5g2468 758 MobiDBLite consensus disorder prediction 153 186 - -
Prci5g2468 758 SUPERFAMILY RNA-binding domain, RBD 513 611 IPR035979 GO:0003676
Prci5g2468 758 Gene3D - 611 754 IPR012677 -
Prci5g2468 758 MobiDBLite consensus disorder prediction 27 62 - -
Prci5g2468 758 MobiDBLite consensus disorder prediction 266 285 - -
Prci5g2468 758 SUPERFAMILY RNA-binding domain, RBD 278 380 IPR035979 GO:0003676
Prci5g2468 758 MobiDBLite consensus disorder prediction 91 152 - -
Prci5g2468 758 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 522 598 IPR000504 GO:0003723
Prci5g2468 758 Gene3D - 489 607 IPR012677 -
Prci5g2468 758 Gene3D - 214 369 IPR012677 -
Prci5g2468 758 Gene3D - 376 488 IPR012677 -
Prci5g2468 758 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 410 477 IPR000504 GO:0003723
Prci5g2468 758 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 291 358 IPR000504 GO:0003723
Prci5g2468 758 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 524 591 IPR000504 GO:0003723
Prci5g2468 758 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 618 688 IPR000504 GO:0003723
Prci5g2468 758 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 289 365 IPR000504 GO:0003723
Prci5g2468 758 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 408 484 IPR000504 GO:0003723
Prci5g2468 758 SMART rrm1_1 523 594 IPR000504 GO:0003723
Prci5g2468 758 SMART rrm1_1 617 693 IPR000504 GO:0003723
Prci5g2468 758 SMART rrm1_1 290 361 IPR000504 GO:0003723
Prci5g2468 758 SMART rrm1_1 409 480 IPR000504 GO:0003723
Prci5g2468 758 MobiDBLite consensus disorder prediction 219 259 - -
Prci5g2468 758 MobiDBLite consensus disorder prediction 63 77 - -
Prci5g2468 758 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 616 697 IPR000504 GO:0003723
Prci5g2468 758 SUPERFAMILY RNA-binding domain, RBD 399 488 IPR035979 GO:0003676
Prci5g2468 758 MobiDBLite consensus disorder prediction 490 519 - -
Prci5g2468 758 MobiDBLite consensus disorder prediction 1 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g2468 Prci-Chr5 41182856 41207290 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g2468 511 696 Eukaryotic Initiation Factors Gene Family AT1G22760 27.692 5.81e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g2468 - K11294 pcin:129311628 1405.96